Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0526 and SMa0527 overlap by 4 nucleotides SMa0527 and SMa5025 are separated by 700 nucleotides
SMa0526: SMa0526 - maltose/trehalose ABC transporter, at 284,576 to 285,622
SMa0526
SMa0527: SMa0527 - phosphatase, at 285,619 to 286,218
SMa0527
SMa5025: SMa5025 - hypothetical protein, at 286,919 to 287,350
SMa5025
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.635 kb on - strand at 284.704 kb on - strand, within SMa0526 at 284.715 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.838 kb on - strand, within SMa0526 at 284.838 kb on - strand, within SMa0526 at 284.855 kb on - strand, within SMa0526 at 285.152 kb on + strand, within SMa0526 at 285.152 kb on + strand, within SMa0526 at 285.153 kb on - strand, within SMa0526 at 285.190 kb on + strand, within SMa0526 at 285.321 kb on + strand, within SMa0526 at 285.333 kb on - strand, within SMa0526 at 285.446 kb on + strand, within SMa0526 at 285.638 kb on + strand at 285.801 kb on + strand, within SMa0527 at 285.802 kb on - strand, within SMa0527 at 285.919 kb on + strand, within SMa0527 at 285.920 kb on - strand, within SMa0527 at 285.943 kb on + strand, within SMa0527 at 285.943 kb on + strand, within SMa0527 at 285.944 kb on - strand, within SMa0527 at 286.131 kb on + strand, within SMa0527 at 286.132 kb on - strand, within SMa0527 at 286.132 kb on - strand, within SMa0527 at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.348 kb on - strand at 286.358 kb on - strand at 286.386 kb on + strand at 286.386 kb on + strand at 286.387 kb on - strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.549 kb on + strand at 286.686 kb on - strand at 286.788 kb on - strand at 286.788 kb on - strand at 286.819 kb on - strand at 286.851 kb on - strand at 286.851 kb on - strand at 286.853 kb on + strand at 286.854 kb on - strand at 287.076 kb on + strand, within SMa5025 at 287.076 kb on + strand, within SMa5025 at 287.077 kb on - strand, within SMa5025
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 284,635 - +0.1 284,704 - SMa0526 0.12 -1.6 284,715 + SMa0526 0.13 -0.4 284,837 + SMa0526 0.25 +1.7 284,837 + SMa0526 0.25 +1.3 284,837 + SMa0526 0.25 +0.8 284,838 - SMa0526 0.25 -0.2 284,838 - SMa0526 0.25 +0.0 284,855 - SMa0526 0.27 +0.6 285,152 + SMa0526 0.55 +2.1 285,152 + SMa0526 0.55 -1.0 285,153 - SMa0526 0.55 +0.7 285,190 + SMa0526 0.59 +0.8 285,321 + SMa0526 0.71 +1.2 285,333 - SMa0526 0.72 +0.0 285,446 + SMa0526 0.83 -0.0 285,638 + +0.7 285,801 + SMa0527 0.30 -2.7 285,802 - SMa0527 0.30 -1.6 285,919 + SMa0527 0.50 +1.6 285,920 - SMa0527 0.50 -0.1 285,943 + SMa0527 0.54 +0.8 285,943 + SMa0527 0.54 +0.2 285,944 - SMa0527 0.54 +1.3 286,131 + SMa0527 0.85 +1.1 286,132 - SMa0527 0.85 -1.0 286,132 - SMa0527 0.85 +0.2 286,253 - +0.4 286,253 - +0.0 286,253 - -0.6 286,253 - -1.2 286,253 - -1.5 286,348 - -0.1 286,358 - +1.8 286,386 + -1.6 286,386 + -0.3 286,387 - +0.1 286,420 + -0.8 286,420 + +0.5 286,420 + +1.3 286,420 + -2.1 286,420 + -0.5 286,549 + -0.3 286,686 - -0.2 286,788 - +0.1 286,788 - -0.0 286,819 - -1.2 286,851 - +0.1 286,851 - -0.2 286,853 + -0.1 286,854 - -0.4 287,076 + SMa5025 0.36 +0.7 287,076 + SMa5025 0.36 -0.1 287,077 - SMa5025 0.37 -0.1
Or see this region's nucleotide sequence