Strain Fitness in Sinorhizobium meliloti 1021 around SMa0229

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0228 and SMa0229 are separated by 318 nucleotidesSMa0229 and SMa0232 are separated by 219 nucleotidesSMa0232 and SMa0233 are separated by 21 nucleotides SMa0228: SMa0228 - glutamate dehydrogenase, at 126,420 to 127,766 SMa0228 SMa0229: SMa0229 - hypothetical protein, at 128,085 to 128,507 SMa0229 SMa0232: SMa0232 - hypothetical protein, at 128,727 to 129,278 SMa0232 SMa0233: SMa0233 - OtsA trehalose-6-phosphate synthase, at 129,300 to 130,691 SMa0233 Position (kb) 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.150 kb on + strand, within SMa0228at 127.151 kb on - strand, within SMa0228at 127.151 kb on - strand, within SMa0228at 127.151 kb on - strand, within SMa0228at 127.158 kb on + strand, within SMa0228at 127.158 kb on + strand, within SMa0228at 127.159 kb on - strand, within SMa0228at 127.160 kb on + strand, within SMa0228at 127.161 kb on - strand, within SMa0228at 127.299 kb on + strand, within SMa0228at 127.329 kb on + strand, within SMa0228at 127.329 kb on + strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.330 kb on - strand, within SMa0228at 127.331 kb on + strand, within SMa0228at 127.331 kb on + strand, within SMa0228at 127.332 kb on - strand, within SMa0228at 127.332 kb on - strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.333 kb on + strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.334 kb on - strand, within SMa0228at 127.510 kb on + strand, within SMa0228at 127.510 kb on + strand, within SMa0228at 127.677 kb on + strandat 127.677 kb on + strandat 127.678 kb on - strandat 127.695 kb on + strandat 127.696 kb on - strandat 127.696 kb on - strandat 127.714 kb on + strandat 127.715 kb on - strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.896 kb on + strandat 127.897 kb on - strandat 127.898 kb on + strandat 127.899 kb on - strandat 127.941 kb on - strandat 128.030 kb on - strandat 128.074 kb on + strandat 128.075 kb on - strandat 128.075 kb on - strandat 128.075 kb on - strandat 128.075 kb on - strandat 128.142 kb on + strand, within SMa0229at 128.166 kb on + strand, within SMa0229at 128.166 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.279 kb on + strand, within SMa0229at 128.280 kb on - strand, within SMa0229at 128.280 kb on - strand, within SMa0229at 128.332 kb on - strand, within SMa0229at 128.332 kb on - strand, within SMa0229at 128.462 kb on - strand, within SMa0229at 128.462 kb on - strand, within SMa0229at 128.607 kb on - strandat 128.704 kb on + strandat 128.705 kb on - strandat 128.902 kb on + strand, within SMa0232at 128.902 kb on + strand, within SMa0232at 128.903 kb on - strand, within SMa0232at 128.914 kb on + strand, within SMa0232at 128.915 kb on - strand, within SMa0232at 128.997 kb on - strand, within SMa0232at 129.301 kb on + strandat 129.389 kb on + strandat 129.390 kb on - strandat 129.428 kb on + strandat 129.428 kb on + strandat 129.444 kb on - strand, within SMa0233at 129.444 kb on - strand, within SMa0233at 129.465 kb on - strand, within SMa0233at 129.465 kb on - strand, within SMa0233at 129.469 kb on + strand, within SMa0233at 129.469 kb on + strand, within SMa0233at 129.496 kb on - strand, within SMa0233

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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127,150 + SMa0228 0.54 -2.2
127,151 - SMa0228 0.54 -0.8
127,151 - SMa0228 0.54 +0.6
127,151 - SMa0228 0.54 -0.1
127,158 + SMa0228 0.55 +0.3
127,158 + SMa0228 0.55 +0.1
127,159 - SMa0228 0.55 +0.5
127,160 + SMa0228 0.55 -0.6
127,161 - SMa0228 0.55 -0.4
127,299 + SMa0228 0.65 -0.9
127,329 + SMa0228 0.67 -0.4
127,329 + SMa0228 0.67 +0.3
127,330 - SMa0228 0.68 -3.1
127,330 - SMa0228 0.68 +0.6
127,330 - SMa0228 0.68 +0.8
127,330 - SMa0228 0.68 +0.0
127,330 - SMa0228 0.68 -0.5
127,330 - SMa0228 0.68 -0.3
127,331 + SMa0228 0.68 -0.2
127,331 + SMa0228 0.68 +0.5
127,332 - SMa0228 0.68 +0.8
127,332 - SMa0228 0.68 +0.2
127,333 + SMa0228 0.68 -0.7
127,333 + SMa0228 0.68 -0.8
127,333 + SMa0228 0.68 +0.2
127,333 + SMa0228 0.68 -0.9
127,333 + SMa0228 0.68 -1.7
127,334 - SMa0228 0.68 -1.0
127,334 - SMa0228 0.68 -0.2
127,334 - SMa0228 0.68 +0.8
127,334 - SMa0228 0.68 +0.7
127,334 - SMa0228 0.68 +0.6
127,510 + SMa0228 0.81 +0.3
127,510 + SMa0228 0.81 -1.5
127,677 + +0.5
127,677 + -0.0
127,678 - -2.2
127,695 + -0.2
127,696 - -1.5
127,696 - +0.0
127,714 + -0.4
127,715 - +0.6
127,896 + -2.0
127,896 + -0.2
127,896 + +0.6
127,896 + +0.2
127,896 + -0.0
127,897 - +0.1
127,898 + -1.0
127,899 - -0.0
127,941 - +0.0
128,030 - -0.1
128,074 + +0.3
128,075 - +1.2
128,075 - +1.0
128,075 - -1.2
128,075 - -3.4
128,142 + SMa0229 0.13 -0.6
128,166 + SMa0229 0.19 -0.3
128,166 + SMa0229 0.19 -0.7
128,279 + SMa0229 0.46 +1.8
128,279 + SMa0229 0.46 +0.0
128,279 + SMa0229 0.46 +0.6
128,279 + SMa0229 0.46 -0.9
128,280 - SMa0229 0.46 -3.3
128,280 - SMa0229 0.46 -1.2
128,332 - SMa0229 0.58 +0.2
128,332 - SMa0229 0.58 -0.4
128,462 - SMa0229 0.89 +0.2
128,462 - SMa0229 0.89 -0.3
128,607 - +0.0
128,704 + -0.3
128,705 - +1.9
128,902 + SMa0232 0.32 +0.7
128,902 + SMa0232 0.32 +1.1
128,903 - SMa0232 0.32 -1.0
128,914 + SMa0232 0.34 +0.5
128,915 - SMa0232 0.34 -0.5
128,997 - SMa0232 0.49 +0.4
129,301 + +0.1
129,389 + +0.8
129,390 - +0.4
129,428 + +0.5
129,428 + -0.4
129,444 - SMa0233 0.10 +0.8
129,444 - SMa0233 0.10 +0.0
129,465 - SMa0233 0.12 -0.8
129,465 - SMa0233 0.12 +0.0
129,469 + SMa0233 0.12 +1.3
129,469 + SMa0233 0.12 -0.8
129,496 - SMa0233 0.14 +1.3

Or see this region's nucleotide sequence