Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21328 and SM_b21329 are separated by 58 nucleotides SM_b21329 and SM_b21330 are separated by 215 nucleotides SM_b21330 and SM_b21331 are separated by 231 nucleotides SM_b21331 and SM_b21332 are separated by 273 nucleotides SM_b21332 and SM_b21333 are separated by 54 nucleotides
SM_b21328: SM_b21328 - Sir2-like transcriptional silencer protein, at 997,274 to 998,092
_b21328
SM_b21329: SM_b21329 - hypothetical protein, at 998,151 to 998,321
_b21329
SM_b21330: SM_b21330 - hypothetical protein, at 998,537 to 998,746
_b21330
SM_b21331: SM_b21331 - hypothetical protein, at 998,978 to 999,298
_b21331
SM_b21332: SM_b21332 - hypothetical protein, at 999,572 to 1,000,069
_b21332
SM_b21333: SM_b21333 - hypothetical protein, at 1,000,124 to 1,000,483
_b21333
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 998.132 kb on - strand at 998.152 kb on + strand at 998.153 kb on - strand at 998.303 kb on + strand, within SM_b21329 at 998.303 kb on + strand, within SM_b21329 at 998.304 kb on - strand, within SM_b21329 at 998.314 kb on + strand at 998.314 kb on + strand at 998.422 kb on + strand at 998.532 kb on + strand at 998.533 kb on - strand at 998.697 kb on + strand, within SM_b21330 at 998.698 kb on - strand, within SM_b21330 at 998.720 kb on + strand, within SM_b21330 at 998.836 kb on + strand at 998.837 kb on - strand at 998.887 kb on + strand at 998.887 kb on + strand at 998.887 kb on + strand at 998.887 kb on + strand at 998.888 kb on - strand at 998.888 kb on - strand at 998.888 kb on - strand at 999.011 kb on - strand, within SM_b21331 at 999.011 kb on - strand, within SM_b21331 at 999.248 kb on + strand, within SM_b21331 at 999.248 kb on + strand, within SM_b21331 at 999.249 kb on - strand, within SM_b21331 at 999.250 kb on + strand, within SM_b21331 at 999.344 kb on - strand at 999.344 kb on - strand at 999.500 kb on + strand at 999.501 kb on - strand at 999.627 kb on - strand, within SM_b21332 at 999.627 kb on - strand, within SM_b21332 at 999.680 kb on - strand, within SM_b21332 at 999.707 kb on + strand, within SM_b21332 at 999.708 kb on - strand, within SM_b21332 at 999.708 kb on - strand, within SM_b21332 at 999.708 kb on - strand, within SM_b21332 at 1000.141 kb on - strand at 1000.141 kb on - strand at 1000.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 998,132 - +0.7 998,152 + -0.3 998,153 - +0.9 998,303 + SM_b21329 0.89 -0.7 998,303 + SM_b21329 0.89 +1.0 998,304 - SM_b21329 0.89 -1.3 998,314 + -0.8 998,314 + -0.1 998,422 + -0.1 998,532 + -1.8 998,533 - -0.6 998,697 + SM_b21330 0.76 -0.1 998,698 - SM_b21330 0.77 +0.4 998,720 + SM_b21330 0.87 -0.2 998,836 + -0.1 998,837 - -0.1 998,887 + -2.2 998,887 + +0.0 998,887 + +0.3 998,887 + -0.2 998,888 - +1.1 998,888 - +1.1 998,888 - -0.1 999,011 - SM_b21331 0.10 -0.6 999,011 - SM_b21331 0.10 -0.7 999,248 + SM_b21331 0.84 +1.0 999,248 + SM_b21331 0.84 -3.5 999,249 - SM_b21331 0.84 -0.2 999,250 + SM_b21331 0.85 -0.9 999,344 - -2.7 999,344 - +0.3 999,500 + -0.0 999,501 - +1.6 999,627 - SM_b21332 0.11 -0.1 999,627 - SM_b21332 0.11 -1.9 999,680 - SM_b21332 0.22 +0.0 999,707 + SM_b21332 0.27 +0.4 999,708 - SM_b21332 0.27 -0.3 999,708 - SM_b21332 0.27 +1.5 999,708 - SM_b21332 0.27 -0.0 1,000,141 - -0.6 1,000,141 - +1.2 1,000,141 - +0.2
Or see this region's nucleotide sequence