Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21216 and SM_b21217 overlap by 4 nucleotides SM_b21217 and SM_b21218 are separated by 2 nucleotides SM_b21218 and SM_b21219 are separated by 2 nucleotides SM_b21219 and SM_b21220 overlap by 1 nucleotides
SM_b21216: SM_b21216 - ABC transporter for D-Glucosamine, ATPase component <small>(from data)</small>, at 778,729 to 779,811
_b21216
SM_b21217: SM_b21217 - glucosamine kinase (EC 2.7.1.8) <small>(from data)</small>, at 779,808 to 780,743
_b21217
SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) <small>(from data)</small>, at 780,746 to 781,765
_b21218
SM_b21219: SM_b21219 - ABC transporter for D-Glucosamine, permease component 1 <small>(from data)</small>, at 781,768 to 782,613
_b21219
SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 <small>(from data)</small>, at 782,613 to 783,494
_b21220
Position (kb) 780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 779.982 kb on - strand, within SM_b21217 at 780.141 kb on - strand, within SM_b21217 at 780.301 kb on + strand, within SM_b21217 at 780.301 kb on + strand, within SM_b21217 at 780.302 kb on - strand, within SM_b21217 at 780.302 kb on - strand, within SM_b21217 at 780.311 kb on + strand, within SM_b21217 at 780.311 kb on + strand, within SM_b21217 at 780.311 kb on + strand, within SM_b21217 at 780.350 kb on - strand, within SM_b21217 at 780.577 kb on + strand, within SM_b21217 at 780.577 kb on + strand, within SM_b21217 at 780.699 kb on + strand at 780.699 kb on + strand at 780.848 kb on - strand, within SM_b21218 at 780.848 kb on - strand, within SM_b21218 at 781.414 kb on + strand, within SM_b21218 at 781.415 kb on - strand, within SM_b21218 at 781.758 kb on - strand at 781.758 kb on - strand at 781.821 kb on + strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.822 kb on - strand at 781.964 kb on + strand, within SM_b21219 at 782.166 kb on - strand, within SM_b21219 at 782.208 kb on - strand, within SM_b21219 at 782.221 kb on - strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.222 kb on + strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.223 kb on - strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.256 kb on + strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.257 kb on - strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.258 kb on + strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219 at 782.259 kb on - strand, within SM_b21219
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 779,982 - SM_b21217 0.19 +0.8 780,141 - SM_b21217 0.36 +0.2 780,301 + SM_b21217 0.53 -0.7 780,301 + SM_b21217 0.53 -0.6 780,302 - SM_b21217 0.53 -0.2 780,302 - SM_b21217 0.53 +0.1 780,311 + SM_b21217 0.54 -0.8 780,311 + SM_b21217 0.54 -2.4 780,311 + SM_b21217 0.54 -1.1 780,350 - SM_b21217 0.58 -0.2 780,577 + SM_b21217 0.82 +1.1 780,577 + SM_b21217 0.82 +0.1 780,699 + +0.5 780,699 + -1.4 780,848 - SM_b21218 0.10 -0.0 780,848 - SM_b21218 0.10 -0.9 781,414 + SM_b21218 0.65 -1.8 781,415 - SM_b21218 0.66 -0.0 781,758 - -0.4 781,758 - -0.6 781,821 + +0.3 781,822 - +0.2 781,822 - +0.0 781,822 - +0.4 781,822 - -0.7 781,822 - +0.4 781,822 - -1.0 781,964 + SM_b21219 0.23 +1.1 782,166 - SM_b21219 0.47 -0.5 782,208 - SM_b21219 0.52 -0.0 782,221 - SM_b21219 0.54 +0.3 782,222 + SM_b21219 0.54 -0.4 782,222 + SM_b21219 0.54 -1.8 782,222 + SM_b21219 0.54 -1.6 782,222 + SM_b21219 0.54 -0.5 782,222 + SM_b21219 0.54 +0.5 782,222 + SM_b21219 0.54 -1.6 782,222 + SM_b21219 0.54 -0.4 782,223 - SM_b21219 0.54 -0.3 782,223 - SM_b21219 0.54 -0.3 782,223 - SM_b21219 0.54 +0.2 782,256 + SM_b21219 0.58 +1.8 782,256 + SM_b21219 0.58 -0.2 782,256 + SM_b21219 0.58 -0.3 782,257 - SM_b21219 0.58 +2.0 782,257 - SM_b21219 0.58 +1.2 782,257 - SM_b21219 0.58 -0.1 782,258 + SM_b21219 0.58 -3.4 782,258 + SM_b21219 0.58 -0.5 782,258 + SM_b21219 0.58 -0.7 782,258 + SM_b21219 0.58 -1.1 782,258 + SM_b21219 0.58 -0.3 782,258 + SM_b21219 0.58 -0.3 782,259 - SM_b21219 0.58 -0.6 782,259 - SM_b21219 0.58 +0.7 782,259 - SM_b21219 0.58 -1.6 782,259 - SM_b21219 0.58 -1.2 782,259 - SM_b21219 0.58 -0.1 782,259 - SM_b21219 0.58 +2.2 782,259 - SM_b21219 0.58 +1.3
Or see this region's nucleotide sequence