Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21217

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21216 and SM_b21217 overlap by 4 nucleotidesSM_b21217 and SM_b21218 are separated by 2 nucleotides SM_b21216: SM_b21216 - ABC transporter for D-Glucosamine, ATPase component (from data), at 778,729 to 779,811 _b21216 SM_b21217: SM_b21217 - glucosamine kinase (EC 2.7.1.8) (from data), at 779,808 to 780,743 _b21217 SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data), at 780,746 to 781,765 _b21218 Position (kb) 779 780 781Strain fitness (log2 ratio) -2 -1 0 1at 779.126 kb on + strand, within SM_b21216at 779.127 kb on - strand, within SM_b21216at 779.147 kb on + strand, within SM_b21216at 779.148 kb on - strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.246 kb on + strand, within SM_b21216at 779.247 kb on - strand, within SM_b21216at 779.561 kb on + strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.562 kb on - strand, within SM_b21216at 779.982 kb on - strand, within SM_b21217at 780.141 kb on - strand, within SM_b21217at 780.301 kb on + strand, within SM_b21217at 780.301 kb on + strand, within SM_b21217at 780.302 kb on - strand, within SM_b21217at 780.302 kb on - strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.311 kb on + strand, within SM_b21217at 780.350 kb on - strand, within SM_b21217at 780.577 kb on + strand, within SM_b21217at 780.577 kb on + strand, within SM_b21217at 780.699 kb on + strandat 780.699 kb on + strandat 780.848 kb on - strand, within SM_b21218at 780.848 kb on - strand, within SM_b21218at 781.414 kb on + strand, within SM_b21218at 781.415 kb on - strand, within SM_b21218

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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779,126 + SM_b21216 0.37 -1.2
779,127 - SM_b21216 0.37 -0.9
779,147 + SM_b21216 0.39 -2.0
779,148 - SM_b21216 0.39 -0.7
779,246 + SM_b21216 0.48 -1.6
779,246 + SM_b21216 0.48 -0.6
779,246 + SM_b21216 0.48 -0.1
779,246 + SM_b21216 0.48 -1.3
779,247 - SM_b21216 0.48 -0.1
779,561 + SM_b21216 0.77 +0.6
779,562 - SM_b21216 0.77 +0.1
779,562 - SM_b21216 0.77 +0.1
779,562 - SM_b21216 0.77 +0.0
779,562 - SM_b21216 0.77 -1.3
779,982 - SM_b21217 0.19 +0.8
780,141 - SM_b21217 0.36 +0.2
780,301 + SM_b21217 0.53 -0.7
780,301 + SM_b21217 0.53 -0.6
780,302 - SM_b21217 0.53 -0.2
780,302 - SM_b21217 0.53 +0.1
780,311 + SM_b21217 0.54 -0.8
780,311 + SM_b21217 0.54 -2.4
780,311 + SM_b21217 0.54 -1.1
780,350 - SM_b21217 0.58 -0.2
780,577 + SM_b21217 0.82 +1.1
780,577 + SM_b21217 0.82 +0.1
780,699 + +0.5
780,699 + -1.4
780,848 - SM_b21218 0.10 -0.0
780,848 - SM_b21218 0.10 -0.9
781,414 + SM_b21218 0.65 -1.8
781,415 - SM_b21218 0.66 -0.0

Or see this region's nucleotide sequence