Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21207 and SM_b21208 overlap by 4 nucleotides SM_b21208 and SM_b21209 are separated by 95 nucleotides SM_b21209 and SM_b21210 overlap by 4 nucleotides SM_b21210 and SM_b21211 are separated by 208 nucleotides
SM_b21207: SM_b21207 - hypothetical protein, at 959,968 to 960,972
_b21207
SM_b21208: SM_b21208 - TetR family transcriptional regulator, at 960,969 to 961,691
_b21208
SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139
_b21209
SM_b21210: SM_b21210 - two-component response regulator protein, at 963,136 to 963,807
_b21210
SM_b21211: SM_b21211 - hypothetical protein, at 964,016 to 965,782
_b21211
Position (kb) 961
962
963
964 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 961.078 kb on + strand, within SM_b21208 at 961.079 kb on - strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.224 kb on - strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.229 kb on - strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.681 kb on + strand at 961.811 kb on - strand at 961.927 kb on - strand, within SM_b21209 at 962.018 kb on + strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.124 kb on - strand, within SM_b21209 at 962.269 kb on + strand, within SM_b21209 at 962.650 kb on - strand, within SM_b21209 at 962.654 kb on - strand, within SM_b21209 at 962.655 kb on + strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.877 kb on + strand, within SM_b21209 at 962.877 kb on + strand, within SM_b21209 at 962.878 kb on - strand, within SM_b21209 at 962.878 kb on - strand, within SM_b21209 at 962.908 kb on - strand, within SM_b21209 at 963.033 kb on + strand at 963.034 kb on - strand at 963.034 kb on - strand at 963.384 kb on + strand, within SM_b21210 at 963.384 kb on + strand, within SM_b21210 at 963.407 kb on + strand, within SM_b21210 at 963.408 kb on - strand, within SM_b21210 at 963.439 kb on + strand, within SM_b21210 at 963.440 kb on - strand, within SM_b21210 at 963.441 kb on + strand, within SM_b21210 at 963.441 kb on + strand, within SM_b21210 at 963.442 kb on - strand, within SM_b21210 at 963.484 kb on - strand, within SM_b21210 at 963.547 kb on - strand, within SM_b21210 at 963.852 kb on + strand at 963.853 kb on - strand at 963.912 kb on + strand at 964.090 kb on + strand at 964.090 kb on + strand at 964.091 kb on - strand at 964.091 kb on - strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.092 kb on + strand at 964.093 kb on - strand at 964.093 kb on - strand at 964.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 961,078 + SM_b21208 0.15 +0.6 961,079 - SM_b21208 0.15 -0.0 961,223 + SM_b21208 0.35 +1.5 961,223 + SM_b21208 0.35 -0.1 961,224 - SM_b21208 0.35 -0.7 961,228 + SM_b21208 0.36 +0.2 961,228 + SM_b21208 0.36 -0.9 961,229 - SM_b21208 0.36 -1.0 961,477 + SM_b21208 0.70 -0.2 961,477 + SM_b21208 0.70 -0.7 961,477 + SM_b21208 0.70 -1.0 961,478 - SM_b21208 0.70 +2.4 961,478 - SM_b21208 0.70 -0.5 961,478 - SM_b21208 0.70 -0.6 961,478 - SM_b21208 0.70 +0.0 961,478 - SM_b21208 0.70 +0.2 961,681 + -1.7 961,811 - -0.2 961,927 - SM_b21209 0.10 -2.0 962,018 + SM_b21209 0.17 -1.1 962,019 - SM_b21209 0.17 -0.5 962,019 - SM_b21209 0.17 -0.6 962,019 - SM_b21209 0.17 -0.1 962,038 + SM_b21209 0.19 -0.8 962,038 + SM_b21209 0.19 -0.3 962,124 - SM_b21209 0.25 -0.8 962,269 + SM_b21209 0.36 -0.2 962,650 - SM_b21209 0.64 +1.0 962,654 - SM_b21209 0.64 -0.4 962,655 + SM_b21209 0.64 +0.5 962,656 - SM_b21209 0.64 -1.7 962,656 - SM_b21209 0.64 -0.6 962,656 - SM_b21209 0.64 +1.7 962,656 - SM_b21209 0.64 -0.6 962,656 - SM_b21209 0.64 -0.4 962,656 - SM_b21209 0.64 -0.3 962,877 + SM_b21209 0.81 -0.8 962,877 + SM_b21209 0.81 -0.6 962,878 - SM_b21209 0.81 +0.2 962,878 - SM_b21209 0.81 -0.3 962,908 - SM_b21209 0.83 +0.7 963,033 + +1.1 963,034 - -0.5 963,034 - -2.9 963,384 + SM_b21210 0.37 -0.2 963,384 + SM_b21210 0.37 -0.3 963,407 + SM_b21210 0.40 +0.3 963,408 - SM_b21210 0.40 -0.5 963,439 + SM_b21210 0.45 -2.9 963,440 - SM_b21210 0.45 -0.0 963,441 + SM_b21210 0.45 -0.6 963,441 + SM_b21210 0.45 -3.1 963,442 - SM_b21210 0.46 -0.2 963,484 - SM_b21210 0.52 -1.5 963,547 - SM_b21210 0.61 -0.0 963,852 + -4.0 963,853 - +0.0 963,912 + -0.6 964,090 + -1.7 964,090 + -0.2 964,091 - -0.1 964,091 - +1.0 964,092 + +0.0 964,092 + -1.8 964,092 + -0.0 964,092 + +0.5 964,092 + +0.3 964,092 + +0.5 964,093 - -0.0 964,093 - -2.3 964,093 - +0.2
Or see this region's nucleotide sequence