Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21202 and SM_b21203 are separated by 100 nucleotides SM_b21203 and SM_b21666 are separated by 60 nucleotides SM_b21666 and SM_b21204 are separated by 87 nucleotides
SM_b21202: SM_b21202 - hypothetical protein, at 953,953 to 954,885
_b21202
SM_b21203: SM_b21203 - esteraselipase/thioesterase, at 954,986 to 955,588
_b21203
SM_b21666: SM_b21666 - hypothetical protein, at 955,649 to 955,867
_b21666
SM_b21204: SM_b21204 - ABC transporter permease, at 955,955 to 957,067
_b21204
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.088 kb on + strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.139 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.434 kb on + strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.478 kb on + strand, within SM_b21202 at 954.706 kb on + strand, within SM_b21202 at 954.883 kb on + strand at 955.001 kb on + strand at 955.001 kb on + strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.002 kb on - strand at 955.117 kb on + strand, within SM_b21203 at 955.117 kb on + strand, within SM_b21203 at 955.143 kb on + strand, within SM_b21203 at 955.193 kb on + strand, within SM_b21203 at 955.193 kb on + strand, within SM_b21203 at 955.194 kb on - strand, within SM_b21203 at 955.292 kb on + strand, within SM_b21203 at 955.293 kb on - strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.487 kb on + strand, within SM_b21203 at 955.488 kb on - strand, within SM_b21203 at 955.488 kb on - strand, within SM_b21203 at 955.611 kb on - strand at 955.611 kb on - strand at 955.635 kb on + strand at 955.636 kb on - strand at 955.776 kb on + strand, within SM_b21666 at 955.870 kb on + strand at 955.871 kb on - strand at 956.054 kb on + strand at 956.055 kb on - strand at 956.055 kb on - strand at 956.094 kb on + strand, within SM_b21204 at 956.095 kb on - strand, within SM_b21204 at 956.274 kb on + strand, within SM_b21204 at 956.350 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 954,088 + SM_b21202 0.14 -0.4 954,089 - SM_b21202 0.15 -2.4 954,089 - SM_b21202 0.15 +1.3 954,089 - SM_b21202 0.15 +2.0 954,089 - SM_b21202 0.15 +0.8 954,097 + SM_b21202 0.15 +0.1 954,097 + SM_b21202 0.15 -0.6 954,097 + SM_b21202 0.15 +0.8 954,098 - SM_b21202 0.16 +0.6 954,098 - SM_b21202 0.16 +0.8 954,098 - SM_b21202 0.16 +1.4 954,100 + SM_b21202 0.16 +1.4 954,100 + SM_b21202 0.16 -0.5 954,101 - SM_b21202 0.16 +0.9 954,101 - SM_b21202 0.16 +0.3 954,139 + SM_b21202 0.20 +0.6 954,428 + SM_b21202 0.51 -0.8 954,428 + SM_b21202 0.51 +0.3 954,434 + SM_b21202 0.52 -2.4 954,435 - SM_b21202 0.52 -0.1 954,435 - SM_b21202 0.52 +1.1 954,478 + SM_b21202 0.56 -0.3 954,706 + SM_b21202 0.81 +0.8 954,883 + -0.9 955,001 + +0.8 955,001 + +0.1 955,002 - +0.2 955,002 - -1.2 955,002 - -2.2 955,002 - +1.7 955,117 + SM_b21203 0.22 -3.1 955,117 + SM_b21203 0.22 +0.2 955,143 + SM_b21203 0.26 -1.1 955,193 + SM_b21203 0.34 -0.8 955,193 + SM_b21203 0.34 -1.2 955,194 - SM_b21203 0.34 -0.3 955,292 + SM_b21203 0.51 +1.6 955,293 - SM_b21203 0.51 +0.1 955,487 + SM_b21203 0.83 +0.9 955,487 + SM_b21203 0.83 -0.5 955,487 + SM_b21203 0.83 -2.0 955,488 - SM_b21203 0.83 -1.1 955,488 - SM_b21203 0.83 -0.0 955,611 - -0.2 955,611 - +0.7 955,635 + +0.8 955,636 - -0.1 955,776 + SM_b21666 0.58 -0.7 955,870 + -0.0 955,871 - +0.8 956,054 + -1.9 956,055 - +1.8 956,055 - +1.5 956,094 + SM_b21204 0.12 +1.0 956,095 - SM_b21204 0.13 -0.6 956,274 + SM_b21204 0.29 +0.6 956,350 + SM_b21204 0.35 -1.2 956,352 + SM_b21204 0.36 +1.2 956,352 + SM_b21204 0.36 +0.1 956,352 + SM_b21204 0.36 -0.1 956,352 + SM_b21204 0.36 -1.5 956,352 + SM_b21204 0.36 +0.8 956,352 + SM_b21204 0.36 -0.4 956,353 - SM_b21204 0.36 +0.9 956,353 - SM_b21204 0.36 +0.5 956,353 - SM_b21204 0.36 -0.4 956,551 - SM_b21204 0.54 +0.4 956,551 - SM_b21204 0.54 -1.8
Or see this region's nucleotide sequence