Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21191 and SM_b21192 are separated by 225 nucleotides SM_b21192 and SM_b21196 are separated by 644 nucleotides
SM_b21191: SM_b21191 - surface saccharide ABC transporter ATP-binding/membrane spanning protein, at 941,311 to 943,104
_b21191
SM_b21192: SM_b21192 - fructose-1,6-bisphosphate aldolase, at 943,330 to 944,373
_b21192
SM_b21196: SM_b21196 - oligopeptide uptake ABC transporter substrate-binding protein precursor, at 945,018 to 946,616
_b21196
Position (kb) 943
944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 942.670 kb on + strand, within SM_b21191 at 942.671 kb on - strand, within SM_b21191 at 942.758 kb on - strand, within SM_b21191 at 943.069 kb on + strand at 943.497 kb on + strand, within SM_b21192 at 943.548 kb on + strand, within SM_b21192 at 943.632 kb on - strand, within SM_b21192 at 943.772 kb on + strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.014 kb on - strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.156 kb on + strand, within SM_b21192 at 944.156 kb on + strand, within SM_b21192 at 944.157 kb on - strand, within SM_b21192 at 944.283 kb on + strand at 944.284 kb on - strand at 944.285 kb on + strand at 944.322 kb on - strand at 944.377 kb on + strand at 944.378 kb on - strand at 944.426 kb on + strand at 944.426 kb on + strand at 944.427 kb on - strand at 944.427 kb on - strand at 944.427 kb on - strand at 944.427 kb on - strand at 944.517 kb on - strand at 944.796 kb on + strand at 945.103 kb on + strand at 945.103 kb on + strand at 945.192 kb on + strand, within SM_b21196 at 945.193 kb on - strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.210 kb on + strand, within SM_b21196 at 945.212 kb on - strand, within SM_b21196 at 945.279 kb on + strand, within SM_b21196 at 945.280 kb on - strand, within SM_b21196
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 942,670 + SM_b21191 0.76 -2.8 942,671 - SM_b21191 0.76 +0.7 942,758 - SM_b21191 0.81 -2.0 943,069 + -0.2 943,497 + SM_b21192 0.16 -1.1 943,548 + SM_b21192 0.21 -1.5 943,632 - SM_b21192 0.29 -1.9 943,772 + SM_b21192 0.42 -0.4 943,773 - SM_b21192 0.42 -1.6 943,773 - SM_b21192 0.42 -2.4 944,013 + SM_b21192 0.65 -2.8 944,013 + SM_b21192 0.65 -0.9 944,014 - SM_b21192 0.66 -2.0 944,015 + SM_b21192 0.66 -1.0 944,015 + SM_b21192 0.66 -0.7 944,015 + SM_b21192 0.66 -3.3 944,015 + SM_b21192 0.66 -0.4 944,016 - SM_b21192 0.66 +0.1 944,016 - SM_b21192 0.66 -1.2 944,016 - SM_b21192 0.66 -1.3 944,016 - SM_b21192 0.66 -0.8 944,016 - SM_b21192 0.66 -1.5 944,016 - SM_b21192 0.66 -1.2 944,156 + SM_b21192 0.79 -0.8 944,156 + SM_b21192 0.79 -2.3 944,157 - SM_b21192 0.79 +0.3 944,283 + -1.2 944,284 - -3.0 944,285 + -1.3 944,322 - -0.7 944,377 + -2.4 944,378 - -3.0 944,426 + -0.5 944,426 + -1.0 944,427 - -2.8 944,427 - -1.4 944,427 - -0.8 944,427 - -3.7 944,517 - +2.0 944,796 + -0.5 945,103 + -0.3 945,103 + -1.1 945,192 + SM_b21196 0.11 -0.4 945,193 - SM_b21196 0.11 +0.1 945,210 + SM_b21196 0.12 -0.4 945,210 + SM_b21196 0.12 +1.1 945,210 + SM_b21196 0.12 +0.5 945,210 + SM_b21196 0.12 +0.1 945,212 - SM_b21196 0.12 -0.1 945,279 + SM_b21196 0.16 -0.1 945,280 - SM_b21196 0.16 -0.8
Or see this region's nucleotide sequence