Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21179 and SM_b21180 are separated by 30 nucleotides SM_b21180 and SM_b21181 are separated by 187 nucleotides
SM_b21179: SM_b21179 - FAD-dependent glycerol-3-phosphate dehydrogenase, at 925,633 to 926,808
_b21179
SM_b21180: SM_b21180 - LysR family transcriptional regulator, at 926,839 to 927,792
_b21180
SM_b21181: SM_b21181 - glutaryl-CoA dehydrogenase, at 927,980 to 929,167
_b21181
Position (kb) 926
927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 925.908 kb on - strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.062 kb on + strand, within SM_b21179 at 926.367 kb on - strand, within SM_b21179 at 926.516 kb on - strand, within SM_b21179 at 926.603 kb on + strand, within SM_b21179 at 926.604 kb on - strand, within SM_b21179 at 926.702 kb on + strand at 926.751 kb on - strand at 926.751 kb on - strand at 926.762 kb on + strand at 926.763 kb on - strand at 926.763 kb on - strand at 926.791 kb on + strand at 927.188 kb on + strand, within SM_b21180 at 927.188 kb on + strand, within SM_b21180 at 927.189 kb on - strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.308 kb on - strand, within SM_b21180 at 927.815 kb on + strand at 927.816 kb on - strand at 927.820 kb on + strand at 927.821 kb on - strand at 927.827 kb on - strand at 927.975 kb on + strand at 927.975 kb on + strand at 927.976 kb on - strand at 927.976 kb on - strand at 927.976 kb on - strand at 928.077 kb on - strand at 928.077 kb on - strand at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.197 kb on - strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.227 kb on - strand, within SM_b21181 at 928.307 kb on + strand, within SM_b21181 at 928.349 kb on + strand, within SM_b21181 at 928.515 kb on + strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.653 kb on + strand, within SM_b21181
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 925,908 - SM_b21179 0.23 +0.2 926,062 + SM_b21179 0.36 +1.8 926,062 + SM_b21179 0.36 +0.1 926,367 - SM_b21179 0.62 +0.3 926,516 - SM_b21179 0.75 -1.5 926,603 + SM_b21179 0.82 +0.3 926,604 - SM_b21179 0.83 -1.2 926,702 + +0.6 926,751 - +1.3 926,751 - +0.6 926,762 + +0.6 926,763 - +0.0 926,763 - -0.2 926,791 + +1.2 927,188 + SM_b21180 0.37 -2.0 927,188 + SM_b21180 0.37 +0.1 927,189 - SM_b21180 0.37 -0.9 927,257 + SM_b21180 0.44 +0.6 927,257 + SM_b21180 0.44 +0.0 927,308 - SM_b21180 0.49 +0.0 927,815 + +0.4 927,816 - +0.3 927,820 + +0.3 927,821 - -2.0 927,827 - -2.1 927,975 + -1.2 927,975 + -0.2 927,976 - +0.4 927,976 - -0.1 927,976 - -0.8 928,077 - -0.3 928,077 - -1.9 928,196 + SM_b21181 0.18 -2.0 928,196 + SM_b21181 0.18 -1.3 928,196 + SM_b21181 0.18 -1.6 928,197 - SM_b21181 0.18 -2.8 928,217 + SM_b21181 0.20 -1.6 928,217 + SM_b21181 0.20 -2.6 928,217 + SM_b21181 0.20 -0.4 928,227 - SM_b21181 0.21 -0.4 928,307 + SM_b21181 0.28 -1.0 928,349 + SM_b21181 0.31 +0.0 928,515 + SM_b21181 0.45 -1.3 928,516 - SM_b21181 0.45 -0.5 928,516 - SM_b21181 0.45 -1.0 928,516 - SM_b21181 0.45 -1.4 928,653 + SM_b21181 0.57 -1.4
Or see this region's nucleotide sequence