Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21136 and SM_b21137 are separated by 5 nucleotides SM_b21137 and SM_b21138 are separated by 13 nucleotides SM_b21138 and SM_b21139 are separated by 36 nucleotides SM_b21139 and SM_b21140 overlap by 4 nucleotides
SM_b21136: SM_b21136 - amino acid ABC transporter permease, at 775,278 to 775,964
_b21136
SM_b21137: SM_b21137 - amino acid ABC transporter permease, at 775,970 to 776,629
_b21137
SM_b21138: SM_b21138 - amino acid ABC transporter ATP-binding protein, at 776,643 to 777,410
_b21138
SM_b21139: SM_b21139 - translation initiation inhibitors, at 777,447 to 777,830
_b21139
SM_b21140: SM_b21140 - transcriptional regulator, at 777,827 to 778,687
_b21140
Position (kb) 776
777
778 Strain fitness (log2 ratio) -1
0
1
2 at 775.689 kb on - strand, within SM_b21136 at 775.703 kb on - strand, within SM_b21136 at 775.760 kb on + strand, within SM_b21136 at 775.785 kb on - strand, within SM_b21136 at 775.894 kb on - strand, within SM_b21136 at 776.195 kb on + strand, within SM_b21137 at 776.195 kb on + strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.196 kb on - strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.198 kb on + strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.199 kb on - strand, within SM_b21137 at 776.219 kb on - strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.375 kb on + strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.376 kb on - strand, within SM_b21137 at 776.559 kb on - strand, within SM_b21137 at 776.574 kb on - strand at 776.954 kb on + strand, within SM_b21138 at 777.000 kb on + strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.219 kb on - strand, within SM_b21138 at 777.280 kb on - strand, within SM_b21138 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.538 kb on - strand, within SM_b21139 at 777.713 kb on - strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.723 kb on + strand, within SM_b21139 at 777.816 kb on + strand at 777.817 kb on - strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.854 kb on - strand at 778.019 kb on + strand, within SM_b21140 at 778.019 kb on + strand, within SM_b21140 at 778.104 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.219 kb on + strand, within SM_b21140 at 778.226 kb on + strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.280 kb on - strand, within SM_b21140 at 778.281 kb on + strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.365 kb on + strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 775,689 - SM_b21136 0.60 -0.4 775,703 - SM_b21136 0.62 -0.4 775,760 + SM_b21136 0.70 +0.8 775,785 - SM_b21136 0.74 -0.4 775,894 - SM_b21136 0.90 -0.4 776,195 + SM_b21137 0.34 +0.0 776,195 + SM_b21137 0.34 -1.6 776,196 - SM_b21137 0.34 -0.4 776,196 - SM_b21137 0.34 +0.8 776,196 - SM_b21137 0.34 -0.5 776,198 + SM_b21137 0.35 +0.4 776,198 + SM_b21137 0.35 -1.6 776,199 - SM_b21137 0.35 -0.2 776,199 - SM_b21137 0.35 -0.4 776,199 - SM_b21137 0.35 -0.1 776,219 - SM_b21137 0.38 +0.3 776,375 + SM_b21137 0.61 +0.5 776,375 + SM_b21137 0.61 +1.1 776,375 + SM_b21137 0.61 +0.5 776,375 + SM_b21137 0.61 +0.8 776,375 + SM_b21137 0.61 +0.5 776,376 - SM_b21137 0.62 -1.4 776,376 - SM_b21137 0.62 -0.3 776,559 - SM_b21137 0.89 +1.6 776,574 - -0.2 776,954 + SM_b21138 0.40 -0.1 777,000 + SM_b21138 0.46 -0.4 777,219 - SM_b21138 0.75 -1.3 777,219 - SM_b21138 0.75 -1.2 777,280 - SM_b21138 0.83 -0.4 777,538 - SM_b21139 0.24 -0.2 777,538 - SM_b21139 0.24 +0.4 777,538 - SM_b21139 0.24 -0.6 777,538 - SM_b21139 0.24 -1.0 777,713 - SM_b21139 0.69 -0.2 777,723 + SM_b21139 0.72 -0.6 777,723 + SM_b21139 0.72 +0.3 777,723 + SM_b21139 0.72 -0.2 777,816 + +2.0 777,817 - +0.5 777,853 + +1.2 777,853 + -0.8 777,854 - -0.8 778,019 + SM_b21140 0.22 -0.7 778,019 + SM_b21140 0.22 -0.7 778,104 - SM_b21140 0.32 +0.2 778,122 - SM_b21140 0.34 +1.2 778,122 - SM_b21140 0.34 -0.2 778,219 + SM_b21140 0.46 -1.0 778,226 + SM_b21140 0.46 +0.2 778,227 - SM_b21140 0.46 -0.8 778,227 - SM_b21140 0.46 +0.5 778,280 - SM_b21140 0.53 -0.9 778,281 + SM_b21140 0.53 -0.4 778,282 - SM_b21140 0.53 -0.4 778,282 - SM_b21140 0.53 +1.3 778,365 + SM_b21140 0.62 +0.8 778,366 - SM_b21140 0.63 -0.8 778,366 - SM_b21140 0.63 +0.3
Or see this region's nucleotide sequence