Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21107 and SM_b21108 are separated by 12 nucleotides SM_b21108 and SM_b21109 overlap by 8 nucleotides
SM_b21107: SM_b21107 - dehydratase involved in L-fucose catabolism <small>(from data)</small>, at 749,230 to 750,342
_b21107
SM_b21108: SM_b21108 - L-fucose mutarotase (EC 5.1.3.29) <small>(from data)</small>, at 750,355 to 750,684
_b21108
SM_b21109: SM_b21109 - L-fucose dehydrogenase (EC 1.1.1.122) <small>(from data)</small>, at 750,677 to 751,759
_b21109
Position (kb) 750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.372 kb on - strand, within SM_b21107 at 749.636 kb on - strand, within SM_b21107 at 749.636 kb on - strand, within SM_b21107 at 749.761 kb on + strand, within SM_b21107 at 749.761 kb on + strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.762 kb on - strand, within SM_b21107 at 749.983 kb on + strand, within SM_b21107 at 750.007 kb on + strand, within SM_b21107 at 750.008 kb on - strand at 750.008 kb on - strand, within SM_b21107 at 750.008 kb on - strand, within SM_b21107 at 750.009 kb on + strand, within SM_b21107 at 750.009 kb on + strand, within SM_b21107 at 750.010 kb on - strand, within SM_b21107 at 750.178 kb on + strand, within SM_b21107 at 750.179 kb on - strand, within SM_b21107 at 750.188 kb on - strand, within SM_b21107 at 750.297 kb on - strand at 750.406 kb on + strand, within SM_b21108 at 750.406 kb on + strand, within SM_b21108 at 750.406 kb on + strand, within SM_b21108 at 750.407 kb on - strand, within SM_b21108 at 750.476 kb on - strand, within SM_b21108 at 750.526 kb on + strand, within SM_b21108 at 750.527 kb on - strand, within SM_b21108 at 750.527 kb on - strand, within SM_b21108 at 750.794 kb on + strand, within SM_b21109 at 750.794 kb on + strand, within SM_b21109 at 750.795 kb on - strand, within SM_b21109 at 750.796 kb on + strand, within SM_b21109 at 750.797 kb on - strand, within SM_b21109 at 751.000 kb on - strand, within SM_b21109 at 751.142 kb on + strand, within SM_b21109 at 751.143 kb on - strand, within SM_b21109 at 751.143 kb on - strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.256 kb on + strand, within SM_b21109 at 751.257 kb on - strand, within SM_b21109 at 751.472 kb on + strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109 at 751.473 kb on - strand, within SM_b21109
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 749,372 - SM_b21107 0.13 -0.2 749,636 - SM_b21107 0.36 -0.2 749,636 - SM_b21107 0.36 -0.7 749,761 + SM_b21107 0.48 +0.0 749,761 + SM_b21107 0.48 -0.3 749,762 - SM_b21107 0.48 +0.3 749,762 - SM_b21107 0.48 +0.6 749,762 - SM_b21107 0.48 -1.5 749,762 - SM_b21107 0.48 +0.2 749,983 + SM_b21107 0.68 -0.6 750,007 + SM_b21107 0.70 -0.0 750,008 - +1.2 750,008 - SM_b21107 0.70 +0.4 750,008 - SM_b21107 0.70 -0.6 750,009 + SM_b21107 0.70 +0.8 750,009 + SM_b21107 0.70 +0.1 750,010 - SM_b21107 0.70 +1.9 750,178 + SM_b21107 0.85 +1.1 750,179 - SM_b21107 0.85 +1.1 750,188 - SM_b21107 0.86 -0.1 750,297 - -0.5 750,406 + SM_b21108 0.15 -1.3 750,406 + SM_b21108 0.15 -1.6 750,406 + SM_b21108 0.15 -1.3 750,407 - SM_b21108 0.16 -1.3 750,476 - SM_b21108 0.37 +0.1 750,526 + SM_b21108 0.52 -1.0 750,527 - SM_b21108 0.52 -0.5 750,527 - SM_b21108 0.52 +0.7 750,794 + SM_b21109 0.11 +0.4 750,794 + SM_b21109 0.11 -0.1 750,795 - SM_b21109 0.11 +0.0 750,796 + SM_b21109 0.11 -0.5 750,797 - SM_b21109 0.11 +0.5 751,000 - SM_b21109 0.30 -0.1 751,142 + SM_b21109 0.43 -0.4 751,143 - SM_b21109 0.43 -0.6 751,143 - SM_b21109 0.43 -0.4 751,256 + SM_b21109 0.53 -2.8 751,256 + SM_b21109 0.53 -0.3 751,256 + SM_b21109 0.53 +0.6 751,257 - SM_b21109 0.54 +0.9 751,472 + SM_b21109 0.73 -0.7 751,473 - SM_b21109 0.73 -0.8 751,473 - SM_b21109 0.73 -2.8 751,473 - SM_b21109 0.73 -0.1
Or see this region's nucleotide sequence