Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21082

Experiment: Sisomicin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21081 and SM_b21082 are separated by 31 nucleotidesSM_b21082 and SM_b21083 are separated by 135 nucleotidesSM_b21083 and SM_b21084 overlap by 4 nucleotidesSM_b21084 and SM_b21085 are separated by 62 nucleotides SM_b21081: SM_b21081 - phosphoglucomutase phosphomannomutase, at 718,406 to 719,953 _b21081 SM_b21082: SM_b21082 - mannose-6-phosphate isomerase, GDP-mannose pyrophosphorylase, at 719,985 to 722,288 _b21082 SM_b21083: SM_b21083 - hypothetical protein, at 722,424 to 722,867 _b21083 SM_b21084: SM_b21084 - hypothetical protein, at 722,864 to 723,217 _b21084 SM_b21085: SM_b21085 - hypothetical protein, at 723,280 to 724,932 _b21085 Position (kb) 719 720 721 722 723Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 719.142 kb on - strand, within SM_b21081at 719.142 kb on - strand, within SM_b21081at 719.143 kb on + strand, within SM_b21081at 719.144 kb on - strand, within SM_b21081at 719.314 kb on + strand, within SM_b21081at 719.418 kb on - strand, within SM_b21081at 719.438 kb on + strand, within SM_b21081at 719.438 kb on + strand, within SM_b21081at 719.438 kb on + strand, within SM_b21081at 719.439 kb on - strand, within SM_b21081at 719.439 kb on - strand, within SM_b21081at 719.439 kb on - strand, within SM_b21081at 719.528 kb on + strand, within SM_b21081at 719.528 kb on + strand, within SM_b21081at 719.907 kb on + strandat 719.936 kb on + strandat 719.952 kb on - strandat 720.257 kb on + strand, within SM_b21082at 720.322 kb on + strand, within SM_b21082at 720.322 kb on + strand, within SM_b21082at 720.323 kb on - strand, within SM_b21082at 720.372 kb on - strand, within SM_b21082at 720.389 kb on - strand, within SM_b21082at 720.453 kb on + strand, within SM_b21082at 720.453 kb on + strand, within SM_b21082at 720.459 kb on + strand, within SM_b21082at 720.460 kb on - strand, within SM_b21082at 720.460 kb on - strand, within SM_b21082at 720.463 kb on + strand, within SM_b21082at 720.463 kb on + strand, within SM_b21082at 720.540 kb on + strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.541 kb on - strand, within SM_b21082at 720.690 kb on + strand, within SM_b21082at 720.690 kb on + strand, within SM_b21082at 720.691 kb on - strand, within SM_b21082at 720.691 kb on - strand, within SM_b21082at 720.691 kb on - strand, within SM_b21082at 720.739 kb on - strand, within SM_b21082at 720.739 kb on - strand, within SM_b21082at 720.790 kb on - strand, within SM_b21082at 720.828 kb on - strand, within SM_b21082at 720.837 kb on - strand, within SM_b21082at 720.898 kb on - strand, within SM_b21082at 721.027 kb on + strand, within SM_b21082at 721.027 kb on + strand, within SM_b21082at 721.027 kb on + strand, within SM_b21082at 721.028 kb on - strand, within SM_b21082at 721.148 kb on + strand, within SM_b21082at 721.149 kb on - strand, within SM_b21082at 721.230 kb on - strand, within SM_b21082at 721.230 kb on - strand, within SM_b21082at 721.255 kb on - strand, within SM_b21082at 721.413 kb on + strand, within SM_b21082at 721.413 kb on + strand, within SM_b21082at 721.413 kb on + strand, within SM_b21082at 721.452 kb on + strand, within SM_b21082at 721.534 kb on + strand, within SM_b21082at 721.589 kb on + strand, within SM_b21082at 721.589 kb on + strand, within SM_b21082at 721.589 kb on + strand, within SM_b21082at 721.589 kb on + strand, within SM_b21082at 721.589 kb on + strandat 721.590 kb on - strand, within SM_b21082at 721.590 kb on - strand, within SM_b21082at 721.590 kb on - strand, within SM_b21082at 721.590 kb on - strand, within SM_b21082at 721.590 kb on - strand, within SM_b21082at 721.723 kb on - strand, within SM_b21082at 721.866 kb on + strand, within SM_b21082at 721.867 kb on - strand, within SM_b21082at 722.072 kb on + strandat 722.155 kb on + strandat 722.155 kb on + strandat 722.155 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.160 kb on + strandat 722.161 kb on - strandat 722.161 kb on - strandat 722.188 kb on - strandat 722.214 kb on + strandat 722.273 kb on + strandat 722.273 kb on + strandat 722.312 kb on + strandat 722.313 kb on - strandat 722.316 kb on + strandat 722.337 kb on - strandat 722.337 kb on - strandat 722.362 kb on - strandat 722.369 kb on - strandat 723.140 kb on + strand, within SM_b21084at 723.140 kb on + strand, within SM_b21084at 723.219 kb on + strandat 723.220 kb on - strandat 723.220 kb on - strandat 723.221 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
remove
719,142 - SM_b21081 0.48 -0.2
719,142 - SM_b21081 0.48 -3.3
719,143 + SM_b21081 0.48 +0.1
719,144 - SM_b21081 0.48 -0.2
719,314 + SM_b21081 0.59 +0.0
719,418 - SM_b21081 0.65 +3.7
719,438 + SM_b21081 0.67 +1.1
719,438 + SM_b21081 0.67 +1.1
719,438 + SM_b21081 0.67 -2.4
719,439 - SM_b21081 0.67 -1.1
719,439 - SM_b21081 0.67 +0.2
719,439 - SM_b21081 0.67 -1.3
719,528 + SM_b21081 0.72 -0.1
719,528 + SM_b21081 0.72 +0.4
719,907 + -0.2
719,936 + +0.1
719,952 - +0.3
720,257 + SM_b21082 0.12 +0.6
720,322 + SM_b21082 0.15 -0.2
720,322 + SM_b21082 0.15 -2.6
720,323 - SM_b21082 0.15 -0.6
720,372 - SM_b21082 0.17 -0.2
720,389 - SM_b21082 0.18 +0.1
720,453 + SM_b21082 0.20 +0.7
720,453 + SM_b21082 0.20 -0.1
720,459 + SM_b21082 0.21 -0.5
720,460 - SM_b21082 0.21 -1.0
720,460 - SM_b21082 0.21 +0.2
720,463 + SM_b21082 0.21 +1.5
720,463 + SM_b21082 0.21 +0.5
720,540 + SM_b21082 0.24 +0.7
720,541 - SM_b21082 0.24 +1.8
720,541 - SM_b21082 0.24 -2.9
720,541 - SM_b21082 0.24 +0.2
720,541 - SM_b21082 0.24 -1.9
720,690 + SM_b21082 0.31 -0.2
720,690 + SM_b21082 0.31 +1.2
720,691 - SM_b21082 0.31 +0.4
720,691 - SM_b21082 0.31 -1.1
720,691 - SM_b21082 0.31 -0.6
720,739 - SM_b21082 0.33 -0.4
720,739 - SM_b21082 0.33 -0.7
720,790 - SM_b21082 0.35 -0.5
720,828 - SM_b21082 0.37 +0.7
720,837 - SM_b21082 0.37 -2.6
720,898 - SM_b21082 0.40 -1.7
721,027 + SM_b21082 0.45 -0.5
721,027 + SM_b21082 0.45 +0.5
721,027 + SM_b21082 0.45 -0.5
721,028 - SM_b21082 0.45 -3.4
721,148 + SM_b21082 0.50 -0.0
721,149 - SM_b21082 0.51 -0.1
721,230 - SM_b21082 0.54 +0.4
721,230 - SM_b21082 0.54 -0.7
721,255 - SM_b21082 0.55 +2.8
721,413 + SM_b21082 0.62 +0.1
721,413 + SM_b21082 0.62 -3.3
721,413 + SM_b21082 0.62 +0.2
721,452 + SM_b21082 0.64 +0.2
721,534 + SM_b21082 0.67 -0.6
721,589 + SM_b21082 0.70 +1.0
721,589 + SM_b21082 0.70 -1.8
721,589 + SM_b21082 0.70 +1.5
721,589 + SM_b21082 0.70 +0.6
721,589 + +0.8
721,590 - SM_b21082 0.70 -0.2
721,590 - SM_b21082 0.70 -0.2
721,590 - SM_b21082 0.70 -1.2
721,590 - SM_b21082 0.70 -0.5
721,590 - SM_b21082 0.70 -0.1
721,723 - SM_b21082 0.75 -0.3
721,866 + SM_b21082 0.82 -0.5
721,867 - SM_b21082 0.82 -0.7
722,072 + -0.2
722,155 + +0.0
722,155 + -0.2
722,155 + +0.9
722,160 + -1.1
722,160 + +1.0
722,160 + +0.0
722,160 + +0.3
722,160 + -0.5
722,160 + -0.2
722,160 + +0.3
722,160 + +0.9
722,161 - +0.3
722,161 - +0.3
722,188 - +0.2
722,214 + -0.5
722,273 + -0.2
722,273 + -0.9
722,312 + -3.8
722,313 - -0.3
722,316 + +0.7
722,337 - +0.5
722,337 - +0.7
722,362 - +0.4
722,369 - -2.3
723,140 + SM_b21084 0.78 +0.8
723,140 + SM_b21084 0.78 +1.3
723,219 + +0.0
723,220 - +0.4
723,220 - -0.1
723,221 + +1.1

Or see this region's nucleotide sequence