Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21075

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21074 and SM_b21075 are separated by 280 nucleotidesSM_b21075 and SM_b21076 overlap by 11 nucleotides SM_b21074: SM_b21074 - glycosyltransferase, at 710,902 to 711,801 _b21074 SM_b21075: SM_b21075 - glycosyltransferase, at 712,082 to 713,314 _b21075 SM_b21076: SM_b21076 - glycosyltransferase, at 713,304 to 714,437 _b21076 Position (kb) 712 713 714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 711.101 kb on + strand, within SM_b21074at 711.323 kb on + strand, within SM_b21074at 711.324 kb on - strand, within SM_b21074at 711.324 kb on - strand, within SM_b21074at 711.513 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.610 kb on + strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.611 kb on - strand, within SM_b21074at 711.631 kb on + strand, within SM_b21074at 711.785 kb on - strandat 711.785 kb on - strandat 711.808 kb on + strandat 711.842 kb on + strandat 711.875 kb on + strandat 711.876 kb on - strandat 711.876 kb on - strandat 711.914 kb on + strandat 711.915 kb on - strandat 711.923 kb on + strandat 711.923 kb on + strandat 711.965 kb on - strandat 712.088 kb on + strandat 712.089 kb on - strandat 712.089 kb on - strandat 712.089 kb on - strandat 712.090 kb on + strandat 712.090 kb on + strandat 712.126 kb on + strandat 712.126 kb on + strandat 712.126 kb on + strandat 712.197 kb on + strandat 712.248 kb on + strand, within SM_b21075at 712.248 kb on + strand, within SM_b21075at 712.248 kb on + strand, within SM_b21075at 712.309 kb on - strand, within SM_b21075at 712.309 kb on - strand, within SM_b21075at 712.319 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.509 kb on + strand, within SM_b21075at 712.510 kb on - strand, within SM_b21075at 712.510 kb on - strand, within SM_b21075at 712.514 kb on + strand, within SM_b21075at 712.514 kb on + strand, within SM_b21075at 712.515 kb on - strand, within SM_b21075at 712.515 kb on - strand, within SM_b21075at 712.518 kb on + strand, within SM_b21075at 712.518 kb on + strand, within SM_b21075at 712.519 kb on - strand, within SM_b21075at 712.559 kb on + strand, within SM_b21075at 712.560 kb on - strand, within SM_b21075at 712.610 kb on + strand, within SM_b21075at 712.611 kb on - strand, within SM_b21075at 712.621 kb on + strand, within SM_b21075at 712.621 kb on + strand, within SM_b21075at 712.622 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.627 kb on - strand, within SM_b21075at 712.685 kb on + strand, within SM_b21075at 712.686 kb on - strand, within SM_b21075at 712.686 kb on - strand, within SM_b21075at 712.699 kb on + strand, within SM_b21075at 712.787 kb on + strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.788 kb on - strand, within SM_b21075at 712.790 kb on + strand, within SM_b21075at 712.790 kb on + strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.791 kb on - strand, within SM_b21075at 712.796 kb on - strand, within SM_b21075at 712.817 kb on + strand, within SM_b21075at 712.839 kb on + strand, within SM_b21075at 712.840 kb on - strand, within SM_b21075at 712.921 kb on + strand, within SM_b21075at 712.921 kb on + strand, within SM_b21075at 712.947 kb on - strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.964 kb on + strand, within SM_b21075at 712.965 kb on - strand, within SM_b21075at 712.965 kb on - strand, within SM_b21075at 713.025 kb on + strand, within SM_b21075at 713.026 kb on - strand, within SM_b21075at 713.131 kb on + strand, within SM_b21075at 713.132 kb on - strand, within SM_b21075at 713.312 kb on + strandat 713.313 kb on - strandat 713.316 kb on + strandat 713.316 kb on + strandat 713.317 kb on - strandat 713.317 kb on - strandat 713.367 kb on + strandat 713.368 kb on - strandat 713.504 kb on + strand, within SM_b21076at 713.516 kb on - strand, within SM_b21076at 713.516 kb on - strand, within SM_b21076at 713.516 kb on - strand, within SM_b21076at 713.620 kb on - strand, within SM_b21076at 713.804 kb on + strand, within SM_b21076at 714.042 kb on + strand, within SM_b21076at 714.043 kb on - strand, within SM_b21076at 714.043 kb on - strand, within SM_b21076at 714.043 kb on - strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.045 kb on + strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.046 kb on - strand, within SM_b21076at 714.079 kb on + strand, within SM_b21076at 714.079 kb on + strand, within SM_b21076at 714.079 kb on + strand, within SM_b21076at 714.092 kb on - strand, within SM_b21076at 714.092 kb on - strand, within SM_b21076at 714.153 kb on - strand, within SM_b21076at 714.225 kb on - strand, within SM_b21076

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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711,101 + SM_b21074 0.22 +0.0
711,323 + SM_b21074 0.47 -0.4
711,324 - SM_b21074 0.47 -1.1
711,324 - SM_b21074 0.47 -1.6
711,513 + SM_b21074 0.68 -0.2
711,610 + SM_b21074 0.79 +0.8
711,610 + SM_b21074 0.79 -0.5
711,610 + SM_b21074 0.79 -0.4
711,610 + SM_b21074 0.79 -0.4
711,611 - SM_b21074 0.79 +0.5
711,611 - SM_b21074 0.79 +0.6
711,611 - SM_b21074 0.79 -0.3
711,611 - SM_b21074 0.79 +4.3
711,631 + SM_b21074 0.81 +0.2
711,785 - -0.4
711,785 - +0.0
711,808 + -0.4
711,842 + -0.6
711,875 + -0.3
711,876 - -0.5
711,876 - -0.3
711,914 + -0.9
711,915 - +0.1
711,923 + +0.2
711,923 + -0.0
711,965 - -0.5
712,088 + -0.7
712,089 - +2.1
712,089 - -0.4
712,089 - +2.1
712,090 + -0.9
712,090 + +1.2
712,126 + -0.1
712,126 + -2.4
712,126 + +0.0
712,197 + +0.8
712,248 + SM_b21075 0.13 +0.0
712,248 + SM_b21075 0.13 +0.6
712,248 + SM_b21075 0.13 +0.4
712,309 - SM_b21075 0.18 -0.3
712,309 - SM_b21075 0.18 -0.9
712,319 + SM_b21075 0.19 -0.3
712,509 + SM_b21075 0.35 +0.8
712,509 + SM_b21075 0.35 +0.1
712,509 + SM_b21075 0.35 -1.7
712,509 + SM_b21075 0.35 -0.2
712,510 - SM_b21075 0.35 -0.1
712,510 - SM_b21075 0.35 -0.4
712,514 + SM_b21075 0.35 +0.4
712,514 + SM_b21075 0.35 +0.5
712,515 - SM_b21075 0.35 -0.2
712,515 - SM_b21075 0.35 -0.1
712,518 + SM_b21075 0.35 -2.9
712,518 + SM_b21075 0.35 +0.3
712,519 - SM_b21075 0.35 -0.0
712,559 + SM_b21075 0.39 +0.1
712,560 - SM_b21075 0.39 -3.4
712,610 + SM_b21075 0.43 -1.0
712,611 - SM_b21075 0.43 +0.5
712,621 + SM_b21075 0.44 +0.2
712,621 + SM_b21075 0.44 +0.1
712,622 - SM_b21075 0.44 +1.5
712,627 - SM_b21075 0.44 +1.2
712,627 - SM_b21075 0.44 +0.7
712,627 - SM_b21075 0.44 -1.2
712,685 + SM_b21075 0.49 +0.0
712,686 - SM_b21075 0.49 +0.6
712,686 - SM_b21075 0.49 +1.6
712,699 + SM_b21075 0.50 -2.2
712,787 + SM_b21075 0.57 +0.4
712,788 - SM_b21075 0.57 +0.0
712,788 - SM_b21075 0.57 -0.1
712,788 - SM_b21075 0.57 +0.1
712,790 + SM_b21075 0.57 -1.5
712,790 + SM_b21075 0.57 +0.4
712,791 - SM_b21075 0.58 +0.6
712,791 - SM_b21075 0.58 -0.8
712,791 - SM_b21075 0.58 +0.1
712,796 - SM_b21075 0.58 -1.9
712,817 + SM_b21075 0.60 -0.8
712,839 + SM_b21075 0.61 -0.4
712,840 - SM_b21075 0.61 -0.4
712,921 + SM_b21075 0.68 -1.4
712,921 + SM_b21075 0.68 +2.1
712,947 - SM_b21075 0.70 -0.0
712,964 + SM_b21075 0.72 +0.3
712,964 + SM_b21075 0.72 +0.7
712,964 + SM_b21075 0.72 +1.7
712,964 + SM_b21075 0.72 -1.0
712,964 + SM_b21075 0.72 -2.1
712,965 - SM_b21075 0.72 +0.7
712,965 - SM_b21075 0.72 +0.7
713,025 + SM_b21075 0.76 -0.3
713,026 - SM_b21075 0.77 +0.1
713,131 + SM_b21075 0.85 -0.7
713,132 - SM_b21075 0.85 +2.7
713,312 + +0.5
713,313 - +0.7
713,316 + -0.7
713,316 + +0.0
713,317 - -0.4
713,317 - -2.9
713,367 + +0.3
713,368 - +0.3
713,504 + SM_b21076 0.18 -0.3
713,516 - SM_b21076 0.19 +0.6
713,516 - SM_b21076 0.19 -1.3
713,516 - SM_b21076 0.19 -0.3
713,620 - SM_b21076 0.28 -0.2
713,804 + SM_b21076 0.44 -0.6
714,042 + SM_b21076 0.65 +0.0
714,043 - SM_b21076 0.65 -0.3
714,043 - SM_b21076 0.65 -0.7
714,043 - SM_b21076 0.65 +1.5
714,045 + SM_b21076 0.65 -0.2
714,045 + SM_b21076 0.65 +0.0
714,045 + SM_b21076 0.65 +0.1
714,045 + SM_b21076 0.65 -1.0
714,045 + SM_b21076 0.65 -0.7
714,045 + SM_b21076 0.65 +0.3
714,045 + SM_b21076 0.65 -0.3
714,045 + SM_b21076 0.65 +0.6
714,046 - SM_b21076 0.65 +2.1
714,046 - SM_b21076 0.65 -0.0
714,046 - SM_b21076 0.65 -0.4
714,046 - SM_b21076 0.65 +0.3
714,046 - SM_b21076 0.65 -0.2
714,046 - SM_b21076 0.65 -0.4
714,079 + SM_b21076 0.68 -1.3
714,079 + SM_b21076 0.68 +1.0
714,079 + SM_b21076 0.68 -0.7
714,092 - SM_b21076 0.69 -0.6
714,092 - SM_b21076 0.69 +1.5
714,153 - SM_b21076 0.75 -0.3
714,225 - SM_b21076 0.81 -1.4

Or see this region's nucleotide sequence