Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21069 and SM_b21070 are separated by 380 nucleotides SM_b21070 and SM_b21071 are separated by 413 nucleotides
SM_b21069: SM_b21069 - hypothetical protein, at 703,975 to 705,393
_b21069
SM_b21070: SM_b21070 - MPA1 family auxiliary surface saccharide export protein, at 705,774 to 707,672
_b21070
SM_b21071: SM_b21071 - UDP-phosphate galactosephosphotransferase, at 708,086 to 708,736
_b21071
Position (kb) 705
706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 704.797 kb on + strand, within SM_b21069 at 704.798 kb on - strand, within SM_b21069 at 704.804 kb on + strand, within SM_b21069 at 704.805 kb on - strand, within SM_b21069 at 704.842 kb on + strand, within SM_b21069 at 704.843 kb on - strand, within SM_b21069 at 704.843 kb on - strand, within SM_b21069 at 704.843 kb on - strand, within SM_b21069 at 704.866 kb on + strand, within SM_b21069 at 704.866 kb on + strand, within SM_b21069 at 704.868 kb on + strand, within SM_b21069 at 704.868 kb on + strand, within SM_b21069 at 704.935 kb on + strand, within SM_b21069 at 704.935 kb on + strand, within SM_b21069 at 705.055 kb on + strand, within SM_b21069 at 705.055 kb on + strand, within SM_b21069 at 705.056 kb on - strand, within SM_b21069 at 705.056 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.133 kb on - strand, within SM_b21069 at 705.232 kb on + strand, within SM_b21069 at 705.233 kb on - strand, within SM_b21069 at 705.233 kb on - strand, within SM_b21069 at 705.233 kb on - strand, within SM_b21069 at 705.280 kb on + strand at 705.281 kb on - strand at 705.281 kb on - strand at 705.281 kb on - strand at 705.306 kb on + strand at 705.306 kb on + strand at 705.306 kb on + strand at 705.307 kb on - strand at 705.307 kb on - strand at 705.342 kb on - strand at 705.364 kb on + strand at 705.457 kb on - strand at 705.465 kb on + strand at 705.521 kb on - strand at 705.523 kb on - strand at 705.532 kb on - strand at 705.541 kb on + strand at 705.541 kb on + strand at 705.541 kb on + strand at 705.600 kb on - strand at 705.600 kb on - strand at 705.640 kb on + strand at 705.640 kb on + strand at 705.641 kb on - strand at 705.712 kb on - strand at 705.712 kb on - strand at 705.712 kb on - strand at 705.723 kb on + strand at 705.723 kb on + strand at 705.724 kb on - strand at 705.724 kb on - strand at 705.724 kb on - strand at 705.778 kb on + strand at 705.778 kb on + strand at 705.778 kb on + strand at 705.778 kb on + strand at 705.819 kb on + strand at 705.819 kb on + strand at 705.886 kb on + strand at 705.887 kb on - strand at 705.944 kb on + strand at 705.971 kb on + strand, within SM_b21070 at 706.031 kb on + strand, within SM_b21070 at 706.031 kb on + strand, within SM_b21070 at 706.031 kb on + strand, within SM_b21070 at 706.192 kb on - strand, within SM_b21070 at 706.303 kb on + strand, within SM_b21070 at 706.303 kb on + strand, within SM_b21070 at 706.303 kb on + strand, within SM_b21070 at 706.330 kb on + strand, within SM_b21070 at 706.344 kb on - strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.380 kb on + strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.381 kb on - strand, within SM_b21070 at 706.386 kb on - strand, within SM_b21070 at 706.392 kb on - strand, within SM_b21070 at 706.392 kb on - strand, within SM_b21070 at 706.593 kb on + strand, within SM_b21070 at 706.716 kb on + strand, within SM_b21070 at 706.716 kb on + strand, within SM_b21070 at 706.717 kb on - strand, within SM_b21070 at 706.717 kb on - strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.728 kb on + strand, within SM_b21070 at 706.729 kb on - strand, within SM_b21070 at 706.776 kb on + strand, within SM_b21070 at 706.777 kb on - strand, within SM_b21070 at 706.913 kb on + strand, within SM_b21070 at 706.913 kb on + strand, within SM_b21070 at 706.914 kb on - strand, within SM_b21070 at 707.029 kb on + strand, within SM_b21070 at 707.030 kb on - strand, within SM_b21070 at 707.030 kb on - strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.032 kb on + strand, within SM_b21070 at 707.033 kb on - strand, within SM_b21070 at 707.072 kb on + strand, within SM_b21070 at 707.072 kb on + strand, within SM_b21070 at 707.073 kb on - strand, within SM_b21070 at 707.073 kb on - strand, within SM_b21070 at 707.087 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.187 kb on + strand, within SM_b21070 at 707.188 kb on - strand, within SM_b21070 at 707.305 kb on + strand, within SM_b21070 at 707.305 kb on + strand, within SM_b21070 at 707.306 kb on - strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.384 kb on + strand, within SM_b21070 at 707.408 kb on - strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.430 kb on + strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.431 kb on - strand, within SM_b21070 at 707.621 kb on + strand at 707.621 kb on + strand at 707.621 kb on + strand at 707.722 kb on + strand at 707.789 kb on + strand at 707.789 kb on + strand at 707.792 kb on + strand at 707.792 kb on + strand at 707.793 kb on - strand at 707.795 kb on + strand at 707.795 kb on + strand at 707.796 kb on - strand at 707.823 kb on + strand at 707.868 kb on + strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.869 kb on - strand at 707.873 kb on - strand at 708.055 kb on + strand at 708.055 kb on + strand at 708.056 kb on - strand at 708.196 kb on - strand, within SM_b21071 at 708.293 kb on + strand, within SM_b21071 at 708.296 kb on - strand, within SM_b21071 at 708.341 kb on + strand, within SM_b21071 at 708.342 kb on - strand, within SM_b21071 at 708.473 kb on - strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.597 kb on + strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.598 kb on - strand, within SM_b21071 at 708.620 kb on + strand, within SM_b21071 at 708.621 kb on - strand, within SM_b21071 at 708.650 kb on + strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.651 kb on - strand, within SM_b21071 at 708.655 kb on - strand, within SM_b21071
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 704,797 + SM_b21069 0.58 +0.7 704,798 - SM_b21069 0.58 -0.0 704,804 + SM_b21069 0.58 -0.2 704,805 - SM_b21069 0.58 +0.4 704,842 + SM_b21069 0.61 +0.1 704,843 - SM_b21069 0.61 -0.1 704,843 - SM_b21069 0.61 -0.8 704,843 - SM_b21069 0.61 -1.7 704,866 + SM_b21069 0.63 +0.2 704,866 + SM_b21069 0.63 -1.3 704,868 + SM_b21069 0.63 -3.4 704,868 + SM_b21069 0.63 +1.3 704,935 + SM_b21069 0.68 +1.2 704,935 + SM_b21069 0.68 +0.1 705,055 + SM_b21069 0.76 +0.3 705,055 + SM_b21069 0.76 +0.2 705,056 - SM_b21069 0.76 -0.8 705,056 - SM_b21069 0.76 +1.4 705,133 - SM_b21069 0.82 -0.2 705,133 - SM_b21069 0.82 +0.9 705,133 - SM_b21069 0.82 -1.2 705,133 - SM_b21069 0.82 +1.4 705,232 + SM_b21069 0.89 -0.1 705,233 - SM_b21069 0.89 -0.2 705,233 - SM_b21069 0.89 +0.3 705,233 - SM_b21069 0.89 +0.3 705,280 + +0.4 705,281 - +1.0 705,281 - -0.2 705,281 - -0.8 705,306 + -0.6 705,306 + +0.1 705,306 + -2.9 705,307 - +1.3 705,307 - -0.3 705,342 - +0.5 705,364 + +0.3 705,457 - -0.7 705,465 + -0.3 705,521 - +0.8 705,523 - -0.5 705,532 - -3.7 705,541 + +0.3 705,541 + +0.2 705,541 + -0.7 705,600 - +1.1 705,600 - -0.2 705,640 + +0.1 705,640 + +0.8 705,641 - -0.3 705,712 - +0.2 705,712 - -1.2 705,712 - -0.1 705,723 + -2.6 705,723 + -2.4 705,724 - +0.5 705,724 - -0.5 705,724 - -1.4 705,778 + -1.3 705,778 + -0.9 705,778 + +0.0 705,778 + +0.8 705,819 + +0.3 705,819 + -0.0 705,886 + +0.2 705,887 - -1.2 705,944 + -0.0 705,971 + SM_b21070 0.10 +0.8 706,031 + SM_b21070 0.14 +0.5 706,031 + SM_b21070 0.14 -1.7 706,031 + SM_b21070 0.14 -0.1 706,192 - SM_b21070 0.22 +1.5 706,303 + SM_b21070 0.28 -0.3 706,303 + SM_b21070 0.28 -2.6 706,303 + SM_b21070 0.28 -0.1 706,330 + SM_b21070 0.29 +0.9 706,344 - SM_b21070 0.30 +1.0 706,380 + SM_b21070 0.32 -1.4 706,380 + SM_b21070 0.32 -1.1 706,380 + SM_b21070 0.32 +0.2 706,380 + SM_b21070 0.32 -1.4 706,380 + SM_b21070 0.32 +0.5 706,381 - SM_b21070 0.32 -3.2 706,381 - SM_b21070 0.32 +0.8 706,381 - SM_b21070 0.32 +2.8 706,381 - SM_b21070 0.32 -0.2 706,381 - SM_b21070 0.32 -0.3 706,381 - SM_b21070 0.32 +0.5 706,381 - SM_b21070 0.32 +2.1 706,381 - SM_b21070 0.32 -1.4 706,381 - SM_b21070 0.32 -1.2 706,386 - SM_b21070 0.32 -1.2 706,392 - SM_b21070 0.33 -1.2 706,392 - SM_b21070 0.33 +0.5 706,593 + SM_b21070 0.43 +0.1 706,716 + SM_b21070 0.50 +0.5 706,716 + SM_b21070 0.50 +0.1 706,717 - SM_b21070 0.50 -0.2 706,717 - SM_b21070 0.50 -0.0 706,728 + SM_b21070 0.50 +0.7 706,728 + SM_b21070 0.50 -2.5 706,728 + SM_b21070 0.50 -0.5 706,728 + SM_b21070 0.50 +3.8 706,729 - SM_b21070 0.50 -0.7 706,776 + SM_b21070 0.53 -0.1 706,777 - SM_b21070 0.53 -0.8 706,913 + SM_b21070 0.60 -1.1 706,913 + SM_b21070 0.60 +0.1 706,914 - SM_b21070 0.60 -0.3 707,029 + SM_b21070 0.66 +0.0 707,030 - SM_b21070 0.66 -0.1 707,030 - SM_b21070 0.66 +0.4 707,032 + SM_b21070 0.66 -0.2 707,032 + SM_b21070 0.66 -1.4 707,032 + SM_b21070 0.66 +0.2 707,032 + SM_b21070 0.66 -0.8 707,033 - SM_b21070 0.66 -0.3 707,072 + SM_b21070 0.68 -3.4 707,072 + SM_b21070 0.68 -1.3 707,073 - SM_b21070 0.68 -2.8 707,073 - SM_b21070 0.68 +0.3 707,087 + SM_b21070 0.69 +0.1 707,187 + SM_b21070 0.74 -0.6 707,187 + SM_b21070 0.74 -0.7 707,187 + SM_b21070 0.74 +1.8 707,188 - SM_b21070 0.74 -1.5 707,305 + SM_b21070 0.81 -1.4 707,305 + SM_b21070 0.81 -2.5 707,306 - SM_b21070 0.81 -1.4 707,384 + SM_b21070 0.85 -0.0 707,384 + SM_b21070 0.85 -0.2 707,384 + SM_b21070 0.85 +0.8 707,408 - SM_b21070 0.86 -0.1 707,430 + SM_b21070 0.87 +1.3 707,430 + SM_b21070 0.87 -1.1 707,430 + SM_b21070 0.87 -0.0 707,431 - SM_b21070 0.87 -0.7 707,431 - SM_b21070 0.87 -1.2 707,431 - SM_b21070 0.87 +0.3 707,431 - SM_b21070 0.87 -0.9 707,621 + -0.4 707,621 + -0.9 707,621 + +0.8 707,722 + -0.1 707,789 + +0.9 707,789 + -0.3 707,792 + -1.0 707,792 + -0.4 707,793 - +0.5 707,795 + +0.5 707,795 + +0.8 707,796 - +0.2 707,823 + -2.4 707,868 + -0.5 707,869 - -0.4 707,869 - -0.2 707,869 - -2.2 707,873 - -0.5 708,055 + -0.0 708,055 + -0.1 708,056 - -2.3 708,196 - SM_b21071 0.17 -0.7 708,293 + SM_b21071 0.32 -0.0 708,296 - SM_b21071 0.32 +0.6 708,341 + SM_b21071 0.39 -0.7 708,342 - SM_b21071 0.39 +1.1 708,473 - SM_b21071 0.59 -3.1 708,597 + SM_b21071 0.78 -0.8 708,597 + SM_b21071 0.78 -0.2 708,597 + SM_b21071 0.78 -0.0 708,598 - SM_b21071 0.79 +1.2 708,598 - SM_b21071 0.79 -1.0 708,598 - SM_b21071 0.79 +1.8 708,598 - SM_b21071 0.79 +0.8 708,620 + SM_b21071 0.82 -2.0 708,621 - SM_b21071 0.82 -1.5 708,650 + SM_b21071 0.87 -0.2 708,651 - SM_b21071 0.87 -0.1 708,651 - SM_b21071 0.87 +0.1 708,651 - SM_b21071 0.87 +1.8 708,655 - SM_b21071 0.87 +0.3
Or see this region's nucleotide sequence