Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20972

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20971 and SM_b20972 overlap by 8 nucleotidesSM_b20972 and SM_b20973 are separated by 106 nucleotides SM_b20971: SM_b20971 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,200,911 to 1,202,143 _b20971 SM_b20972: SM_b20972 - sugar uptake ABC transporter ATP-binding protein, at 1,202,136 to 1,203,311 _b20972 SM_b20973: SM_b20973 - hypothetical protein, at 1,203,418 to 1,206,444 _b20973 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1201.311 kb on + strand, within SM_b20971at 1201.311 kb on + strand, within SM_b20971at 1201.312 kb on - strand, within SM_b20971at 1201.312 kb on - strand, within SM_b20971at 1201.333 kb on + strand, within SM_b20971at 1201.489 kb on + strand, within SM_b20971at 1201.490 kb on - strand, within SM_b20971at 1201.497 kb on + strand, within SM_b20971at 1201.498 kb on - strand, within SM_b20971at 1201.498 kb on - strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.530 kb on + strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.531 kb on - strand, within SM_b20971at 1201.602 kb on + strand, within SM_b20971at 1201.714 kb on - strand, within SM_b20971at 1201.714 kb on - strand, within SM_b20971at 1201.863 kb on + strand, within SM_b20971at 1201.863 kb on + strand, within SM_b20971at 1201.864 kb on - strand, within SM_b20971at 1201.867 kb on - strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.885 kb on + strand, within SM_b20971at 1201.886 kb on - strand, within SM_b20971at 1201.886 kb on - strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.887 kb on + strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1201.888 kb on - strand, within SM_b20971at 1202.135 kb on - strandat 1202.196 kb on - strandat 1202.360 kb on + strand, within SM_b20972at 1202.361 kb on - strand, within SM_b20972at 1202.361 kb on - strand, within SM_b20972at 1202.507 kb on + strand, within SM_b20972at 1202.530 kb on - strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.644 kb on + strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.645 kb on - strand, within SM_b20972at 1202.720 kb on + strand, within SM_b20972at 1202.720 kb on + strand, within SM_b20972at 1202.721 kb on - strand, within SM_b20972at 1202.721 kb on - strand, within SM_b20972at 1202.746 kb on + strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.747 kb on - strand, within SM_b20972at 1202.841 kb on + strand, within SM_b20972at 1202.841 kb on + strand, within SM_b20972at 1202.999 kb on + strand, within SM_b20972at 1203.000 kb on - strand, within SM_b20972at 1203.045 kb on - strand, within SM_b20972at 1203.061 kb on + strand, within SM_b20972at 1203.654 kb on - strandat 1203.678 kb on + strandat 1203.679 kb on - strandat 1203.825 kb on - strand, within SM_b20973at 1203.825 kb on - strand, within SM_b20973at 1203.919 kb on + strand, within SM_b20973at 1203.919 kb on + strand, within SM_b20973at 1203.919 kb on + strand, within SM_b20973at 1203.920 kb on - strand, within SM_b20973at 1203.920 kb on - strand, within SM_b20973at 1203.957 kb on + strand, within SM_b20973at 1203.957 kb on + strand, within SM_b20973at 1203.958 kb on - strand, within SM_b20973at 1203.958 kb on - strand, within SM_b20973at 1203.958 kb on - strand, within SM_b20973at 1204.024 kb on + strand, within SM_b20973at 1204.024 kb on + strand, within SM_b20973at 1204.025 kb on - strand, within SM_b20973at 1204.025 kb on - strand, within SM_b20973at 1204.034 kb on + strand, within SM_b20973at 1204.035 kb on - strand, within SM_b20973at 1204.035 kb on - strand, within SM_b20973at 1204.166 kb on + strand, within SM_b20973at 1204.166 kb on + strand, within SM_b20973at 1204.194 kb on - strand, within SM_b20973at 1204.212 kb on - strand, within SM_b20973at 1204.212 kb on - strand, within SM_b20973at 1204.278 kb on + strand, within SM_b20973at 1204.278 kb on + strand, within SM_b20973at 1204.278 kb on + strand, within SM_b20973

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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1,201,311 + SM_b20971 0.32 -0.1
1,201,311 + SM_b20971 0.32 -0.4
1,201,312 - SM_b20971 0.33 +0.0
1,201,312 - SM_b20971 0.33 -0.9
1,201,333 + SM_b20971 0.34 +0.5
1,201,489 + SM_b20971 0.47 -1.0
1,201,490 - SM_b20971 0.47 +0.1
1,201,497 + SM_b20971 0.48 -2.5
1,201,498 - SM_b20971 0.48 -0.8
1,201,498 - SM_b20971 0.48 +2.5
1,201,530 + SM_b20971 0.50 +0.7
1,201,530 + SM_b20971 0.50 -0.3
1,201,530 + SM_b20971 0.50 +0.2
1,201,530 + SM_b20971 0.50 -0.4
1,201,531 - SM_b20971 0.50 -0.0
1,201,531 - SM_b20971 0.50 -0.6
1,201,531 - SM_b20971 0.50 +0.1
1,201,531 - SM_b20971 0.50 -0.7
1,201,602 + SM_b20971 0.56 +0.3
1,201,714 - SM_b20971 0.65 +1.5
1,201,714 - SM_b20971 0.65 -3.0
1,201,863 + SM_b20971 0.77 -0.3
1,201,863 + SM_b20971 0.77 +0.6
1,201,864 - SM_b20971 0.77 +0.4
1,201,867 - SM_b20971 0.78 +1.6
1,201,885 + SM_b20971 0.79 +0.2
1,201,885 + SM_b20971 0.79 +0.5
1,201,885 + SM_b20971 0.79 -1.4
1,201,885 + SM_b20971 0.79 -1.4
1,201,886 - SM_b20971 0.79 +0.4
1,201,886 - SM_b20971 0.79 -0.2
1,201,887 + SM_b20971 0.79 -1.0
1,201,887 + SM_b20971 0.79 -0.8
1,201,887 + SM_b20971 0.79 +0.0
1,201,887 + SM_b20971 0.79 +0.0
1,201,887 + SM_b20971 0.79 +0.1
1,201,887 + SM_b20971 0.79 +1.7
1,201,887 + SM_b20971 0.79 -0.1
1,201,887 + SM_b20971 0.79 -0.5
1,201,887 + SM_b20971 0.79 -0.1
1,201,888 - SM_b20971 0.79 -0.5
1,201,888 - SM_b20971 0.79 -0.7
1,201,888 - SM_b20971 0.79 +0.7
1,201,888 - SM_b20971 0.79 +0.3
1,201,888 - SM_b20971 0.79 -0.6
1,201,888 - SM_b20971 0.79 -0.8
1,201,888 - SM_b20971 0.79 +0.1
1,201,888 - SM_b20971 0.79 +0.6
1,201,888 - SM_b20971 0.79 +0.9
1,201,888 - SM_b20971 0.79 +0.2
1,202,135 - -0.2
1,202,196 - +0.9
1,202,360 + SM_b20972 0.19 +0.1
1,202,361 - SM_b20972 0.19 -0.5
1,202,361 - SM_b20972 0.19 -1.2
1,202,507 + SM_b20972 0.32 +0.2
1,202,530 - SM_b20972 0.34 -0.9
1,202,644 + SM_b20972 0.43 -0.4
1,202,644 + SM_b20972 0.43 -0.6
1,202,644 + SM_b20972 0.43 -0.1
1,202,645 - SM_b20972 0.43 -1.3
1,202,645 - SM_b20972 0.43 -1.8
1,202,645 - SM_b20972 0.43 -0.4
1,202,720 + SM_b20972 0.50 -1.1
1,202,720 + SM_b20972 0.50 +2.0
1,202,721 - SM_b20972 0.50 +0.3
1,202,721 - SM_b20972 0.50 -3.0
1,202,746 + SM_b20972 0.52 -0.0
1,202,747 - SM_b20972 0.52 -0.7
1,202,747 - SM_b20972 0.52 +0.3
1,202,747 - SM_b20972 0.52 +0.8
1,202,841 + SM_b20972 0.60 +0.1
1,202,841 + SM_b20972 0.60 +0.2
1,202,999 + SM_b20972 0.73 -1.3
1,203,000 - SM_b20972 0.73 -0.8
1,203,045 - SM_b20972 0.77 -0.3
1,203,061 + SM_b20972 0.79 -0.5
1,203,654 - -0.7
1,203,678 + +0.4
1,203,679 - -1.1
1,203,825 - SM_b20973 0.13 -0.6
1,203,825 - SM_b20973 0.13 -2.6
1,203,919 + SM_b20973 0.17 -1.0
1,203,919 + SM_b20973 0.17 -0.5
1,203,919 + SM_b20973 0.17 +0.2
1,203,920 - SM_b20973 0.17 +1.8
1,203,920 - SM_b20973 0.17 -0.1
1,203,957 + SM_b20973 0.18 +0.9
1,203,957 + SM_b20973 0.18 +0.3
1,203,958 - SM_b20973 0.18 -0.8
1,203,958 - SM_b20973 0.18 -1.0
1,203,958 - SM_b20973 0.18 +0.1
1,204,024 + SM_b20973 0.20 +3.4
1,204,024 + SM_b20973 0.20 +0.9
1,204,025 - SM_b20973 0.20 -0.8
1,204,025 - SM_b20973 0.20 -0.4
1,204,034 + SM_b20973 0.20 +0.5
1,204,035 - SM_b20973 0.20 -0.2
1,204,035 - SM_b20973 0.20 -0.7
1,204,166 + SM_b20973 0.25 +1.0
1,204,166 + SM_b20973 0.25 -1.4
1,204,194 - SM_b20973 0.26 -1.8
1,204,212 - SM_b20973 0.26 -0.3
1,204,212 - SM_b20973 0.26 +0.1
1,204,278 + SM_b20973 0.28 +0.3
1,204,278 + SM_b20973 0.28 -1.5
1,204,278 + SM_b20973 0.28 -0.2

Or see this region's nucleotide sequence