Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20948

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20947 and SM_b20948 are separated by 134 nucleotidesSM_b20948 and SM_b20949 overlap by 10 nucleotides SM_b20947: SM_b20947 - posttranscriptional regulator, repressor protein, at 1,174,312 to 1,174,608 _b20947 SM_b20948: SM_b20948 - glucosyltransferase, at 1,174,743 to 1,175,771 _b20948 SM_b20949: SM_b20949 - pyruvyltransferase, at 1,175,762 to 1,176,712 _b20949 Position (kb) 1174 1175 1176Strain fitness (log2 ratio) -2 -1 0 1 2at 1173.788 kb on - strandat 1173.805 kb on - strandat 1173.810 kb on + strandat 1173.813 kb on + strandat 1173.999 kb on + strandat 1173.999 kb on + strandat 1174.000 kb on - strandat 1174.046 kb on + strandat 1174.047 kb on - strandat 1174.047 kb on - strandat 1174.047 kb on - strandat 1174.179 kb on + strandat 1174.180 kb on - strandat 1174.180 kb on - strandat 1174.180 kb on - strandat 1174.200 kb on - strandat 1174.232 kb on + strandat 1174.235 kb on + strandat 1174.237 kb on + strandat 1174.237 kb on + strandat 1175.236 kb on + strand, within SM_b20948at 1175.552 kb on - strand, within SM_b20948

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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1,173,788 - +0.5
1,173,805 - -0.9
1,173,810 + -0.6
1,173,813 + -0.2
1,173,999 + +0.8
1,173,999 + -0.4
1,174,000 - -0.4
1,174,046 + +0.6
1,174,047 - -0.4
1,174,047 - -0.6
1,174,047 - +1.0
1,174,179 + +2.0
1,174,180 - -0.8
1,174,180 - -1.2
1,174,180 - -0.7
1,174,200 - -0.1
1,174,232 + +0.4
1,174,235 + +0.6
1,174,237 + +0.1
1,174,237 + +1.5
1,175,236 + SM_b20948 0.48 -2.7
1,175,552 - SM_b20948 0.79 -1.5

Or see this region's nucleotide sequence