Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20820 and SM_b20821 are separated by 80 nucleotides SM_b20821 and SM_b20822 are separated by 244 nucleotides
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
SM_b20821: SM_b20821 - ATPGTP-binding hydroxymethyltransferase, at 610,001 to 610,801
_b20821
SM_b20822: SM_b20822 - cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833, at 611,046 to 611,870
_b20822
Position (kb) 610
611 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.497 kb on - strand, within SM_b20820 at 609.537 kb on + strand, within SM_b20820 at 609.538 kb on - strand, within SM_b20820 at 609.663 kb on + strand, within SM_b20820 at 609.664 kb on - strand, within SM_b20820 at 609.923 kb on - strand at 609.988 kb on - strand at 610.229 kb on + strand, within SM_b20821 at 610.229 kb on + strand, within SM_b20821 at 610.230 kb on - strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.610 kb on + strand, within SM_b20821 at 610.611 kb on - strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.653 kb on - strand, within SM_b20821 at 610.924 kb on + strand at 610.925 kb on - strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.078 kb on - strand at 611.078 kb on - strand at 611.181 kb on + strand, within SM_b20822 at 611.182 kb on - strand, within SM_b20822 at 611.316 kb on + strand, within SM_b20822 at 611.376 kb on + strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.381 kb on + strand, within SM_b20822 at 611.471 kb on + strand, within SM_b20822 at 611.598 kb on + strand, within SM_b20822 at 611.782 kb on - strand, within SM_b20822
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 609,104 + SM_b20820 0.34 -0.5 609,104 + SM_b20820 0.34 +0.1 609,105 - SM_b20820 0.34 -2.2 609,105 - SM_b20820 0.34 +2.6 609,105 - SM_b20820 0.34 +1.4 609,497 - SM_b20820 0.66 -0.2 609,537 + SM_b20820 0.69 -0.0 609,538 - SM_b20820 0.69 +0.1 609,663 + SM_b20820 0.79 +0.6 609,664 - SM_b20820 0.79 +0.7 609,923 - -0.8 609,988 - +0.0 610,229 + SM_b20821 0.28 -0.3 610,229 + SM_b20821 0.28 +0.2 610,230 - SM_b20821 0.29 +0.8 610,568 + SM_b20821 0.71 -1.7 610,568 + SM_b20821 0.71 +1.9 610,568 + SM_b20821 0.71 -0.1 610,610 + SM_b20821 0.76 -0.1 610,611 - SM_b20821 0.76 -1.1 610,631 + SM_b20821 0.79 -2.8 610,631 + SM_b20821 0.79 -1.8 610,653 - SM_b20821 0.81 -0.2 610,924 + -0.4 610,925 - -1.2 611,077 + +0.1 611,077 + +0.0 611,077 + +0.8 611,077 + -2.4 611,077 + -0.6 611,078 - +1.4 611,078 - -0.2 611,181 + SM_b20822 0.16 -1.8 611,182 - SM_b20822 0.16 -0.3 611,316 + SM_b20822 0.33 -1.1 611,376 + SM_b20822 0.40 -3.0 611,377 - SM_b20822 0.40 +0.4 611,377 - SM_b20822 0.40 -0.7 611,381 + SM_b20822 0.41 -1.8 611,471 + SM_b20822 0.52 -0.3 611,598 + SM_b20822 0.67 +0.6 611,782 - SM_b20822 0.89 -0.2
Or see this region's nucleotide sequence