Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20768

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20767 and SM_b20768 are separated by 16 nucleotidesSM_b20768 and SM_b20769 are separated by 53 nucleotides SM_b20767: SM_b20767 - dihydroxyacetone kinase, at 1,558,643 to 1,560,361 _b20767 SM_b20768: SM_b20768 - hypothetical protein, at 1,560,378 to 1,561,319 _b20768 SM_b20769: SM_b20769 - hypothetical protein, at 1,561,373 to 1,562,911 _b20769 Position (kb) 1560 1561 1562Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1559.571 kb on + strand, within SM_b20767at 1559.572 kb on - strand, within SM_b20767at 1559.651 kb on - strand, within SM_b20767at 1560.294 kb on + strandat 1560.294 kb on + strandat 1560.295 kb on - strandat 1560.404 kb on + strandat 1560.405 kb on - strandat 1560.405 kb on - strandat 1560.415 kb on + strandat 1560.416 kb on - strandat 1560.458 kb on - strandat 1560.595 kb on + strand, within SM_b20768at 1560.595 kb on + strand, within SM_b20768at 1560.613 kb on + strand, within SM_b20768at 1560.613 kb on + strand, within SM_b20768at 1560.614 kb on - strand, within SM_b20768at 1560.766 kb on + strand, within SM_b20768at 1560.766 kb on + strand, within SM_b20768at 1560.767 kb on - strand, within SM_b20768at 1560.767 kb on - strand, within SM_b20768at 1560.778 kb on + strand, within SM_b20768at 1560.778 kb on + strand, within SM_b20768at 1560.779 kb on - strand, within SM_b20768at 1560.779 kb on - strand, within SM_b20768at 1561.003 kb on + strand, within SM_b20768at 1561.035 kb on + strand, within SM_b20768at 1561.035 kb on + strand, within SM_b20768at 1561.035 kb on + strand, within SM_b20768at 1561.036 kb on - strand, within SM_b20768at 1561.036 kb on - strand, within SM_b20768at 1561.261 kb on + strandat 1561.348 kb on + strandat 1561.639 kb on - strand, within SM_b20769at 1561.639 kb on - strand, within SM_b20769at 1561.698 kb on + strand, within SM_b20769at 1561.770 kb on + strand, within SM_b20769at 1561.770 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1562.161 kb on - strand, within SM_b20769

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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1,559,571 + SM_b20767 0.54 +0.3
1,559,572 - SM_b20767 0.54 -1.0
1,559,651 - SM_b20767 0.59 -0.1
1,560,294 + +0.1
1,560,294 + -1.5
1,560,295 - -0.1
1,560,404 + +2.9
1,560,405 - +2.9
1,560,405 - +0.3
1,560,415 + -0.2
1,560,416 - -2.5
1,560,458 - -0.3
1,560,595 + SM_b20768 0.23 +0.0
1,560,595 + SM_b20768 0.23 +1.0
1,560,613 + SM_b20768 0.25 -0.4
1,560,613 + SM_b20768 0.25 -1.0
1,560,614 - SM_b20768 0.25 -2.3
1,560,766 + SM_b20768 0.41 -1.5
1,560,766 + SM_b20768 0.41 -0.4
1,560,767 - SM_b20768 0.41 -0.3
1,560,767 - SM_b20768 0.41 -0.7
1,560,778 + SM_b20768 0.42 +0.1
1,560,778 + SM_b20768 0.42 -1.3
1,560,779 - SM_b20768 0.43 +1.1
1,560,779 - SM_b20768 0.43 -1.8
1,561,003 + SM_b20768 0.66 -1.0
1,561,035 + SM_b20768 0.70 +0.2
1,561,035 + SM_b20768 0.70 -2.2
1,561,035 + SM_b20768 0.70 -2.6
1,561,036 - SM_b20768 0.70 -0.7
1,561,036 - SM_b20768 0.70 -0.7
1,561,261 + +0.9
1,561,348 + -0.8
1,561,639 - SM_b20769 0.17 -0.4
1,561,639 - SM_b20769 0.17 +0.2
1,561,698 + SM_b20769 0.21 +0.6
1,561,770 + SM_b20769 0.26 -0.3
1,561,770 + SM_b20769 0.26 +0.9
1,561,821 + SM_b20769 0.29 -3.5
1,561,821 + SM_b20769 0.29 -0.7
1,561,821 + SM_b20769 0.29 -0.3
1,561,821 + SM_b20769 0.29 -0.5
1,562,161 - SM_b20769 0.51 +0.1

Or see this region's nucleotide sequence