Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20754 and SM_b20755 are separated by 96 nucleotides SM_b20755 and SM_b20756 are separated by 12 nucleotides
SM_b20754: SM_b20754 - hypothetical protein, at 1,543,624 to 1,545,099
_b20754
SM_b20755: SM_b20755 - propionyl-CoA carboxylase subunit beta, at 1,545,196 to 1,546,728
_b20755
SM_b20756: SM_b20756 - propionyl-CoA carboxylase subunit alpha, at 1,546,741 to 1,548,753
_b20756
Position (kb)
1545
1546
1547 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1544.213 kb on + strand, within SM_b20754 at 1544.240 kb on + strand, within SM_b20754 at 1544.240 kb on + strand, within SM_b20754 at 1544.271 kb on - strand, within SM_b20754 at 1544.271 kb on - strand, within SM_b20754 at 1544.271 kb on - strand, within SM_b20754 at 1544.402 kb on - strand, within SM_b20754 at 1544.464 kb on + strand, within SM_b20754 at 1544.487 kb on - strand, within SM_b20754 at 1544.573 kb on + strand, within SM_b20754 at 1544.573 kb on + strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.574 kb on - strand, within SM_b20754 at 1544.612 kb on + strand, within SM_b20754 at 1544.690 kb on + strand, within SM_b20754 at 1544.774 kb on + strand, within SM_b20754 at 1544.774 kb on + strand, within SM_b20754 at 1544.936 kb on + strand, within SM_b20754 at 1544.936 kb on + strand, within SM_b20754 at 1545.022 kb on - strand at 1545.023 kb on + strand at 1545.023 kb on + strand at 1545.024 kb on - strand at 1545.024 kb on - strand at 1545.143 kb on - strand at 1545.206 kb on + strand at 1545.355 kb on + strand, within SM_b20755 at 1545.355 kb on + strand, within SM_b20755 at 1545.355 kb on + strand, within SM_b20755 at 1545.356 kb on - strand, within SM_b20755 at 1545.356 kb on - strand, within SM_b20755 at 1545.713 kb on - strand, within SM_b20755 at 1545.713 kb on - strand, within SM_b20755 at 1545.735 kb on + strand, within SM_b20755 at 1545.736 kb on - strand, within SM_b20755 at 1545.760 kb on + strand, within SM_b20755 at 1545.760 kb on + strand, within SM_b20755 at 1545.761 kb on - strand, within SM_b20755 at 1546.011 kb on - strand, within SM_b20755 at 1546.036 kb on + strand, within SM_b20755 at 1546.037 kb on - strand, within SM_b20755 at 1546.351 kb on + strand, within SM_b20755 at 1546.352 kb on - strand, within SM_b20755 at 1546.352 kb on - strand, within SM_b20755 at 1546.399 kb on + strand, within SM_b20755 at 1546.400 kb on - strand, within SM_b20755 at 1546.411 kb on + strand, within SM_b20755 at 1546.453 kb on + strand, within SM_b20755 at 1546.453 kb on + strand, within SM_b20755 at 1546.454 kb on - strand, within SM_b20755 at 1546.454 kb on - strand, within SM_b20755 at 1546.513 kb on + strand, within SM_b20755 at 1546.514 kb on - strand, within SM_b20755 at 1546.614 kb on - strand at 1546.928 kb on - strand at 1546.928 kb on - strand at 1546.928 kb on - strand at 1546.944 kb on + strand, within SM_b20756 at 1547.152 kb on - strand, within SM_b20756 at 1547.152 kb on - strand, within SM_b20756 at 1547.410 kb on - strand, within SM_b20756 at 1547.416 kb on + strand, within SM_b20756 at 1547.416 kb on + strand, within SM_b20756 at 1547.417 kb on - strand, within SM_b20756 at 1547.417 kb on - strand, within SM_b20756
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 1,544,213 + SM_b20754 0.40 -0.0 1,544,240 + SM_b20754 0.42 +0.4 1,544,240 + SM_b20754 0.42 -0.0 1,544,271 - SM_b20754 0.44 -0.3 1,544,271 - SM_b20754 0.44 +0.8 1,544,271 - SM_b20754 0.44 -0.0 1,544,402 - SM_b20754 0.53 +0.5 1,544,464 + SM_b20754 0.57 -0.2 1,544,487 - SM_b20754 0.58 -1.1 1,544,573 + SM_b20754 0.64 -1.5 1,544,573 + SM_b20754 0.64 -0.2 1,544,574 - SM_b20754 0.64 +0.0 1,544,574 - SM_b20754 0.64 -0.1 1,544,574 - SM_b20754 0.64 -1.3 1,544,574 - SM_b20754 0.64 -1.0 1,544,612 + SM_b20754 0.67 +0.5 1,544,690 + SM_b20754 0.72 -0.4 1,544,774 + SM_b20754 0.78 +1.7 1,544,774 + SM_b20754 0.78 -0.1 1,544,936 + SM_b20754 0.89 +0.3 1,544,936 + SM_b20754 0.89 +0.9 1,545,022 - -0.2 1,545,023 + +0.2 1,545,023 + -2.0 1,545,024 - +0.1 1,545,024 - +1.6 1,545,143 - -0.7 1,545,206 + +1.1 1,545,355 + SM_b20755 0.10 -0.1 1,545,355 + SM_b20755 0.10 +4.4 1,545,355 + SM_b20755 0.10 -0.6 1,545,356 - SM_b20755 0.10 +0.3 1,545,356 - SM_b20755 0.10 -1.1 1,545,713 - SM_b20755 0.34 -0.1 1,545,713 - SM_b20755 0.34 -2.1 1,545,735 + SM_b20755 0.35 +0.3 1,545,736 - SM_b20755 0.35 -1.3 1,545,760 + SM_b20755 0.37 -0.1 1,545,760 + SM_b20755 0.37 -0.6 1,545,761 - SM_b20755 0.37 +0.9 1,546,011 - SM_b20755 0.53 -0.5 1,546,036 + SM_b20755 0.55 +0.5 1,546,037 - SM_b20755 0.55 +0.5 1,546,351 + SM_b20755 0.75 -1.1 1,546,352 - SM_b20755 0.75 -0.5 1,546,352 - SM_b20755 0.75 -1.7 1,546,399 + SM_b20755 0.78 -1.0 1,546,400 - SM_b20755 0.79 -2.6 1,546,411 + SM_b20755 0.79 -0.4 1,546,453 + SM_b20755 0.82 +0.9 1,546,453 + SM_b20755 0.82 -0.7 1,546,454 - SM_b20755 0.82 -1.1 1,546,454 - SM_b20755 0.82 -0.5 1,546,513 + SM_b20755 0.86 +0.3 1,546,514 - SM_b20755 0.86 +0.5 1,546,614 - +0.4 1,546,928 - -0.7 1,546,928 - -0.1 1,546,928 - -1.3 1,546,944 + SM_b20756 0.10 -0.2 1,547,152 - SM_b20756 0.20 -0.6 1,547,152 - SM_b20756 0.20 +0.1 1,547,410 - SM_b20756 0.33 -0.3 1,547,416 + SM_b20756 0.34 -1.7 1,547,416 + SM_b20756 0.34 -2.5 1,547,417 - SM_b20756 0.34 -1.1 1,547,417 - SM_b20756 0.34 -1.5
Or see this region's nucleotide sequence