Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20726 and SM_b20727 are separated by 74 nucleotides SM_b20727 and SM_b20728 are separated by 82 nucleotides SM_b20728 and SM_b20729 are separated by 108 nucleotides SM_b20729 and SM_b20745 are separated by 459 nucleotides
SM_b20726: SM_b20726 - hypothetical protein, at 1,530,777 to 1,532,294
_b20726
SM_b20727: SM_b20727 - hypothetical protein, at 1,532,369 to 1,532,602
_b20727
SM_b20728: SM_b20728 - hypothetical protein, at 1,532,685 to 1,532,894
_b20728
SM_b20729: SM_b20729 - hypothetical protein, at 1,533,003 to 1,533,416
_b20729
SM_b20745: SM_b20745 - glutatmine synthetase II protein, at 1,533,876 to 1,534,910
_b20745
Position (kb)
1533
1534 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1532.820 kb on - strand, within SM_b20728 at 1532.820 kb on - strand, within SM_b20728 at 1532.820 kb on - strand, within SM_b20728 at 1533.042 kb on + strand at 1533.394 kb on + strand at 1533.395 kb on - strand at 1533.395 kb on - strand at 1533.395 kb on - strand at 1533.395 kb on - strand at 1533.528 kb on + strand at 1533.528 kb on + strand at 1533.529 kb on - strand at 1533.536 kb on + strand at 1533.536 kb on + strand at 1533.536 kb on + strand at 1533.536 kb on + strand at 1533.537 kb on - strand at 1533.537 kb on - strand at 1533.537 kb on - strand at 1533.537 kb on - strand at 1533.538 kb on + strand at 1533.539 kb on - strand at 1533.539 kb on - strand at 1533.539 kb on - strand at 1533.549 kb on + strand at 1533.549 kb on + strand at 1533.549 kb on + strand at 1533.550 kb on - strand at 1533.579 kb on + strand at 1533.643 kb on + strand at 1533.643 kb on + strand at 1533.644 kb on - strand at 1533.672 kb on + strand at 1533.673 kb on - strand at 1533.675 kb on - strand at 1533.675 kb on - strand at 1533.757 kb on + strand at 1533.758 kb on - strand at 1533.848 kb on + strand at 1533.848 kb on + strand at 1533.983 kb on - strand, within SM_b20745 at 1533.991 kb on + strand, within SM_b20745 at 1534.117 kb on + strand, within SM_b20745 at 1534.117 kb on + strand, within SM_b20745 at 1534.117 kb on + strand, within SM_b20745 at 1534.174 kb on + strand, within SM_b20745 at 1534.201 kb on + strand, within SM_b20745 at 1534.202 kb on - strand, within SM_b20745 at 1534.202 kb on - strand, within SM_b20745 at 1534.202 kb on - strand, within SM_b20745 at 1534.202 kb on - strand, within SM_b20745 at 1534.315 kb on + strand, within SM_b20745 at 1534.315 kb on + strand, within SM_b20745
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 1,532,820 - SM_b20728 0.64 -0.3 1,532,820 - SM_b20728 0.64 -0.6 1,532,820 - SM_b20728 0.64 -0.8 1,533,042 + +0.1 1,533,394 + -0.7 1,533,395 - +0.5 1,533,395 - +0.6 1,533,395 - -1.4 1,533,395 - +1.5 1,533,528 + -0.7 1,533,528 + -2.8 1,533,529 - +1.5 1,533,536 + +0.0 1,533,536 + +0.6 1,533,536 + -1.5 1,533,536 + +0.0 1,533,537 - +0.1 1,533,537 - -0.3 1,533,537 - -0.3 1,533,537 - -1.2 1,533,538 + -1.1 1,533,539 - +0.0 1,533,539 - -1.3 1,533,539 - -1.9 1,533,549 + -0.9 1,533,549 + -1.4 1,533,549 + -0.7 1,533,550 - -0.3 1,533,579 + +0.0 1,533,643 + -1.5 1,533,643 + -0.3 1,533,644 - +1.9 1,533,672 + +0.7 1,533,673 - +0.5 1,533,675 - -0.2 1,533,675 - -1.5 1,533,757 + +0.0 1,533,758 - -0.6 1,533,848 + +1.1 1,533,848 + -0.7 1,533,983 - SM_b20745 0.10 -2.1 1,533,991 + SM_b20745 0.11 -1.7 1,534,117 + SM_b20745 0.23 +0.4 1,534,117 + SM_b20745 0.23 +0.6 1,534,117 + SM_b20745 0.23 -0.1 1,534,174 + SM_b20745 0.29 +0.3 1,534,201 + SM_b20745 0.31 -2.6 1,534,202 - SM_b20745 0.31 +0.2 1,534,202 - SM_b20745 0.31 +0.1 1,534,202 - SM_b20745 0.31 +0.0 1,534,202 - SM_b20745 0.31 +1.9 1,534,315 + SM_b20745 0.42 -0.5 1,534,315 + SM_b20745 0.42 +0.2
Or see this region's nucleotide sequence