Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20705 and SM_b20706 are separated by 133 nucleotides SM_b20706 and SM_b20707 are separated by 51 nucleotides SM_b20707 and SM_b20708 are separated by 1 nucleotides SM_b20708 and SM_b20709 are separated by 210 nucleotides
SM_b20705: SM_b20705 - hypothetical protein, at 1,507,236 to 1,508,147
_b20705
SM_b20706: SM_b20706 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,508,281 to 1,509,057
_b20706
SM_b20707: SM_b20707 - adenylate cyclase, at 1,509,109 to 1,510,371
_b20707
SM_b20708: SM_b20708 - methylated-DNA--protein-cysteine methyltransferase, at 1,510,373 to 1,510,924
_b20708
SM_b20709: SM_b20709 - 3-methyladenine DNA glycosylase, at 1,511,135 to 1,511,692
_b20709
Position (kb)
1509
1510
1511 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1508.137 kb on + strand at 1508.146 kb on - strand at 1508.233 kb on - strand at 1508.377 kb on + strand, within SM_b20706 at 1508.527 kb on + strand, within SM_b20706 at 1508.527 kb on + strand, within SM_b20706 at 1508.597 kb on - strand, within SM_b20706 at 1508.597 kb on - strand, within SM_b20706 at 1508.713 kb on + strand, within SM_b20706 at 1508.926 kb on - strand, within SM_b20706 at 1509.004 kb on + strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.005 kb on - strand at 1509.025 kb on + strand at 1509.026 kb on - strand at 1509.026 kb on - strand at 1509.043 kb on + strand at 1509.167 kb on + strand at 1509.255 kb on + strand, within SM_b20707 at 1509.328 kb on + strand, within SM_b20707 at 1509.339 kb on - strand, within SM_b20707 at 1509.339 kb on - strand, within SM_b20707 at 1509.339 kb on - strand, within SM_b20707 at 1509.569 kb on + strand, within SM_b20707 at 1509.607 kb on + strand, within SM_b20707 at 1509.607 kb on + strand, within SM_b20707 at 1509.728 kb on + strand, within SM_b20707 at 1509.728 kb on + strand, within SM_b20707 at 1509.729 kb on - strand, within SM_b20707 at 1509.801 kb on + strand, within SM_b20707 at 1509.801 kb on + strand, within SM_b20707 at 1509.801 kb on + strand, within SM_b20707 at 1509.802 kb on - strand, within SM_b20707 at 1509.885 kb on + strand, within SM_b20707 at 1509.885 kb on + strand, within SM_b20707 at 1509.908 kb on + strand, within SM_b20707 at 1509.909 kb on - strand, within SM_b20707 at 1509.909 kb on - strand, within SM_b20707 at 1509.941 kb on + strand, within SM_b20707 at 1509.942 kb on - strand, within SM_b20707 at 1509.950 kb on + strand, within SM_b20707 at 1510.067 kb on + strand, within SM_b20707 at 1510.067 kb on + strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.068 kb on - strand, within SM_b20707 at 1510.072 kb on - strand, within SM_b20707 at 1510.072 kb on - strand, within SM_b20707 at 1510.105 kb on + strand, within SM_b20707 at 1510.106 kb on - strand, within SM_b20707 at 1510.608 kb on + strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.651 kb on - strand, within SM_b20708 at 1510.654 kb on + strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.655 kb on - strand, within SM_b20708 at 1510.914 kb on + strand at 1510.978 kb on + strand at 1510.978 kb on + strand at 1511.052 kb on - strand at 1511.173 kb on + strand at 1511.241 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.342 kb on + strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.343 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709 at 1511.349 kb on - strand, within SM_b20709
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 1,508,137 + +0.0 1,508,146 - -3.2 1,508,233 - -0.5 1,508,377 + SM_b20706 0.12 +1.2 1,508,527 + SM_b20706 0.32 -0.3 1,508,527 + SM_b20706 0.32 -0.4 1,508,597 - SM_b20706 0.41 -0.1 1,508,597 - SM_b20706 0.41 +0.7 1,508,713 + SM_b20706 0.56 -0.6 1,508,926 - SM_b20706 0.83 +0.5 1,509,004 + +1.2 1,509,005 - -0.4 1,509,005 - -1.1 1,509,005 - +0.0 1,509,005 - -1.6 1,509,025 + +1.1 1,509,026 - +2.0 1,509,026 - +0.4 1,509,043 + -1.0 1,509,167 + -2.1 1,509,255 + SM_b20707 0.12 +0.5 1,509,328 + SM_b20707 0.17 +0.6 1,509,339 - SM_b20707 0.18 +0.2 1,509,339 - SM_b20707 0.18 -1.0 1,509,339 - SM_b20707 0.18 +0.1 1,509,569 + SM_b20707 0.36 +1.7 1,509,607 + SM_b20707 0.39 -0.8 1,509,607 + SM_b20707 0.39 +1.3 1,509,728 + SM_b20707 0.49 -0.1 1,509,728 + SM_b20707 0.49 +0.5 1,509,729 - SM_b20707 0.49 +0.1 1,509,801 + SM_b20707 0.55 +0.3 1,509,801 + SM_b20707 0.55 -0.4 1,509,801 + SM_b20707 0.55 +0.1 1,509,802 - SM_b20707 0.55 +0.9 1,509,885 + SM_b20707 0.61 +1.0 1,509,885 + SM_b20707 0.61 -1.5 1,509,908 + SM_b20707 0.63 +0.3 1,509,909 - SM_b20707 0.63 -0.0 1,509,909 - SM_b20707 0.63 +0.2 1,509,941 + SM_b20707 0.66 +0.7 1,509,942 - SM_b20707 0.66 -0.8 1,509,950 + SM_b20707 0.67 -0.5 1,510,067 + SM_b20707 0.76 +1.5 1,510,067 + SM_b20707 0.76 +0.3 1,510,068 - SM_b20707 0.76 -0.7 1,510,068 - SM_b20707 0.76 +0.4 1,510,068 - SM_b20707 0.76 -0.7 1,510,068 - SM_b20707 0.76 -0.1 1,510,068 - SM_b20707 0.76 +0.9 1,510,068 - SM_b20707 0.76 +0.3 1,510,068 - SM_b20707 0.76 -1.2 1,510,068 - SM_b20707 0.76 +0.4 1,510,068 - SM_b20707 0.76 -0.2 1,510,072 - SM_b20707 0.76 +1.7 1,510,072 - SM_b20707 0.76 +0.4 1,510,105 + SM_b20707 0.79 -0.2 1,510,106 - SM_b20707 0.79 -0.3 1,510,608 + SM_b20708 0.43 +0.0 1,510,651 - SM_b20708 0.50 +0.8 1,510,651 - SM_b20708 0.50 -0.1 1,510,654 + SM_b20708 0.51 +0.5 1,510,655 - SM_b20708 0.51 +0.6 1,510,655 - SM_b20708 0.51 +0.3 1,510,655 - SM_b20708 0.51 +1.0 1,510,914 + +0.6 1,510,978 + +0.2 1,510,978 + +1.4 1,511,052 - -1.4 1,511,173 + +0.2 1,511,241 + SM_b20709 0.19 +0.7 1,511,342 + SM_b20709 0.37 +3.2 1,511,342 + SM_b20709 0.37 +0.5 1,511,342 + SM_b20709 0.37 +0.3 1,511,343 - SM_b20709 0.37 -0.5 1,511,343 - SM_b20709 0.37 +0.3 1,511,343 - SM_b20709 0.37 -1.1 1,511,343 - SM_b20709 0.37 +1.3 1,511,343 - SM_b20709 0.37 -0.7 1,511,349 - SM_b20709 0.38 +0.9 1,511,349 - SM_b20709 0.38 -0.7 1,511,349 - SM_b20709 0.38 +0.0 1,511,349 - SM_b20709 0.38 -0.0
Or see this region's nucleotide sequence