Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20677
Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Sisomicin 0.004 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,477,888 | + | SM_b20676 | 0.13 | -2.8 | |
1,477,888 | + | SM_b20676 | 0.13 | +0.9 | |
1,477,888 | + | SM_b20676 | 0.13 | -3.0 | |
1,477,889 | - | SM_b20676 | 0.13 | -3.7 | |
1,477,889 | - | SM_b20676 | 0.13 | -2.0 | |
1,477,889 | - | SM_b20676 | 0.13 | -2.4 | |
1,478,043 | + | SM_b20676 | 0.30 | -0.5 | |
1,478,044 | - | SM_b20676 | 0.30 | -2.2 | |
1,478,339 | + | SM_b20676 | 0.62 | -3.4 | |
1,478,744 | - | -0.1 | |||
1,478,793 | + | -1.4 | |||
1,478,794 | - | -1.5 | |||
1,478,794 | - | +1.5 | |||
1,478,806 | - | -1.5 | |||
1,478,806 | - | -0.1 | |||
1,478,836 | + | SM_b20677 | 0.10 | +0.2 | |
1,478,836 | + | SM_b20677 | 0.10 | +0.6 | |
1,478,836 | + | SM_b20677 | 0.10 | -1.7 | |
1,478,836 | + | SM_b20677 | 0.10 | +0.2 | |
1,478,837 | - | SM_b20677 | 0.10 | -0.8 | |
1,478,837 | - | SM_b20677 | 0.10 | -2.5 | |
1,479,087 | + | SM_b20677 | 0.61 | +0.2 | |
1,479,087 | + | SM_b20677 | 0.61 | -0.6 | |
1,479,088 | - | SM_b20677 | 0.61 | +1.3 | |
1,479,272 | + | +0.0 | |||
1,479,273 | - | -1.0 | |||
1,479,273 | - | -0.1 | |||
1,479,480 | + | SM_b20678 | 0.12 | -0.5 | |
1,479,568 | + | SM_b20678 | 0.19 | -0.1 | |
1,480,118 | - | SM_b20678 | 0.62 | +0.4 |
Or see this region's nucleotide sequence