Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20631 and SM_b20632 are separated by 19 nucleotides SM_b20632 and SM_b20633 overlap by 4 nucleotides
SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939
_b20631
SM_b20632: SM_b20632 - sugar uptake ABC transporter permease, at 1,651,959 to 1,652,822
_b20632
SM_b20633: SM_b20633 - sugar uptake ABC transporter permease, at 1,652,819 to 1,653,736
_b20633
Position (kb)
1651
1652
1653 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1650.969 kb on + strand, within SM_b20631 at 1650.969 kb on + strand, within SM_b20631 at 1650.970 kb on - strand, within SM_b20631 at 1650.972 kb on + strand, within SM_b20631 at 1651.023 kb on + strand, within SM_b20631 at 1651.023 kb on + strand, within SM_b20631 at 1651.023 kb on + strand, within SM_b20631 at 1651.023 kb on + strand, within SM_b20631 at 1651.023 kb on + strand, within SM_b20631 at 1651.023 kb on + strand, within SM_b20631 at 1651.023 kb on + strand, within SM_b20631 at 1651.024 kb on - strand, within SM_b20631 at 1651.024 kb on - strand, within SM_b20631 at 1651.024 kb on - strand, within SM_b20631 at 1651.024 kb on - strand, within SM_b20631 at 1651.089 kb on + strand, within SM_b20631 at 1651.089 kb on + strand, within SM_b20631 at 1651.120 kb on - strand, within SM_b20631 at 1651.125 kb on + strand, within SM_b20631 at 1651.125 kb on + strand, within SM_b20631 at 1651.125 kb on + strand, within SM_b20631 at 1651.126 kb on - strand, within SM_b20631 at 1651.126 kb on - strand, within SM_b20631 at 1651.126 kb on - strand, within SM_b20631 at 1651.192 kb on - strand, within SM_b20631 at 1651.197 kb on + strand, within SM_b20631 at 1651.197 kb on + strand, within SM_b20631 at 1651.197 kb on + strand, within SM_b20631 at 1651.197 kb on + strand, within SM_b20631 at 1651.198 kb on - strand, within SM_b20631 at 1651.198 kb on - strand, within SM_b20631 at 1651.198 kb on - strand, within SM_b20631 at 1651.374 kb on + strand, within SM_b20631 at 1651.420 kb on - strand, within SM_b20631 at 1651.611 kb on + strand, within SM_b20631 at 1651.612 kb on - strand, within SM_b20631 at 1651.612 kb on - strand, within SM_b20631 at 1651.675 kb on - strand, within SM_b20631 at 1651.994 kb on - strand at 1651.994 kb on - strand at 1652.126 kb on - strand, within SM_b20632 at 1652.359 kb on + strand, within SM_b20632 at 1652.360 kb on - strand, within SM_b20632 at 1652.360 kb on - strand, within SM_b20632 at 1652.952 kb on + strand, within SM_b20633 at 1652.952 kb on + strand, within SM_b20633 at 1652.953 kb on - strand, within SM_b20633 at 1653.003 kb on + strand, within SM_b20633 at 1653.003 kb on + strand, within SM_b20633 at 1653.004 kb on - strand, within SM_b20633 at 1653.238 kb on + strand, within SM_b20633 at 1653.287 kb on - strand, within SM_b20633 at 1653.479 kb on - strand, within SM_b20633 at 1653.481 kb on - strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.537 kb on + strand, within SM_b20633 at 1653.538 kb on - strand, within SM_b20633 at 1653.538 kb on - strand, within SM_b20633 at 1653.658 kb on + strand at 1653.659 kb on - strand at 1653.660 kb on + strand at 1653.660 kb on + strand at 1653.660 kb on + strand at 1653.661 kb on - strand at 1653.795 kb on + strand at 1653.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 1,650,969 + SM_b20631 0.50 -0.4 1,650,969 + SM_b20631 0.50 -0.4 1,650,970 - SM_b20631 0.50 +0.2 1,650,972 + SM_b20631 0.50 -1.7 1,651,023 + SM_b20631 0.52 +0.4 1,651,023 + SM_b20631 0.52 +0.0 1,651,023 + SM_b20631 0.52 +0.3 1,651,023 + SM_b20631 0.52 +0.6 1,651,023 + SM_b20631 0.52 +0.2 1,651,023 + SM_b20631 0.52 -0.6 1,651,023 + SM_b20631 0.52 -1.0 1,651,024 - SM_b20631 0.52 +0.4 1,651,024 - SM_b20631 0.52 +0.7 1,651,024 - SM_b20631 0.52 +0.2 1,651,024 - SM_b20631 0.52 +0.4 1,651,089 + SM_b20631 0.56 +0.0 1,651,089 + SM_b20631 0.56 -0.2 1,651,120 - SM_b20631 0.57 +0.4 1,651,125 + SM_b20631 0.58 -0.1 1,651,125 + SM_b20631 0.58 +0.3 1,651,125 + SM_b20631 0.58 +0.5 1,651,126 - SM_b20631 0.58 -2.0 1,651,126 - SM_b20631 0.58 +0.1 1,651,126 - SM_b20631 0.58 -0.8 1,651,192 - SM_b20631 0.61 -0.3 1,651,197 + SM_b20631 0.61 +1.1 1,651,197 + SM_b20631 0.61 +1.1 1,651,197 + SM_b20631 0.61 +0.0 1,651,197 + SM_b20631 0.61 -0.1 1,651,198 - SM_b20631 0.61 -1.1 1,651,198 - SM_b20631 0.61 +0.3 1,651,198 - SM_b20631 0.61 -0.6 1,651,374 + SM_b20631 0.71 -0.6 1,651,420 - SM_b20631 0.73 -1.5 1,651,611 + SM_b20631 0.83 -1.5 1,651,612 - SM_b20631 0.83 -0.9 1,651,612 - SM_b20631 0.83 -0.4 1,651,675 - SM_b20631 0.86 -0.7 1,651,994 - -0.7 1,651,994 - +0.1 1,652,126 - SM_b20632 0.19 -1.6 1,652,359 + SM_b20632 0.46 -0.4 1,652,360 - SM_b20632 0.46 -0.6 1,652,360 - SM_b20632 0.46 -1.0 1,652,952 + SM_b20633 0.14 +0.2 1,652,952 + SM_b20633 0.14 +2.6 1,652,953 - SM_b20633 0.15 -0.0 1,653,003 + SM_b20633 0.20 +0.9 1,653,003 + SM_b20633 0.20 -0.0 1,653,004 - SM_b20633 0.20 +1.3 1,653,238 + SM_b20633 0.46 -0.5 1,653,287 - SM_b20633 0.51 +1.5 1,653,479 - SM_b20633 0.72 +1.2 1,653,481 - SM_b20633 0.72 -1.3 1,653,537 + SM_b20633 0.78 +0.2 1,653,537 + SM_b20633 0.78 +3.1 1,653,537 + SM_b20633 0.78 -1.5 1,653,537 + SM_b20633 0.78 -1.9 1,653,537 + SM_b20633 0.78 +0.2 1,653,538 - SM_b20633 0.78 -1.1 1,653,538 - SM_b20633 0.78 -1.7 1,653,658 + -0.8 1,653,659 - -0.2 1,653,660 + -0.2 1,653,660 + -0.9 1,653,660 + -0.8 1,653,661 - -0.3 1,653,795 + +1.0 1,653,795 + -0.7
Or see this region's nucleotide sequence