Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20419 and SM_b20420 are separated by 121 nucleotides SM_b20420 and SM_b20421 are separated by 152 nucleotides
SM_b20419: SM_b20419 - glycerol-3-phosphate ABC transporter ATP-binding protein, at 432,821 to 433,870
_b20419
SM_b20420: SM_b20420 - glutathione S-transferase, at 433,992 to 434,618
_b20420
SM_b20421: SM_b20421 - transposase, at 434,771 to 435,847
_b20421
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 433.039 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.057 kb on + strand, within SM_b20419 at 433.090 kb on + strand, within SM_b20419 at 433.115 kb on + strand, within SM_b20419 at 433.132 kb on + strand, within SM_b20419 at 433.133 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.389 kb on - strand, within SM_b20419 at 433.642 kb on + strand, within SM_b20419 at 433.643 kb on - strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.727 kb on + strand, within SM_b20419 at 433.728 kb on - strand, within SM_b20419 at 433.868 kb on + strand at 434.003 kb on - strand at 434.003 kb on - strand at 434.003 kb on - strand at 434.004 kb on + strand at 434.011 kb on + strand at 434.089 kb on + strand, within SM_b20420 at 434.090 kb on - strand, within SM_b20420 at 434.090 kb on - strand, within SM_b20420 at 434.202 kb on + strand, within SM_b20420 at 434.202 kb on + strand, within SM_b20420 at 434.203 kb on - strand, within SM_b20420 at 434.203 kb on - strand, within SM_b20420 at 434.217 kb on + strand, within SM_b20420 at 434.234 kb on + strand, within SM_b20420 at 434.234 kb on + strand, within SM_b20420 at 434.235 kb on - strand, within SM_b20420 at 434.268 kb on + strand, within SM_b20420 at 434.268 kb on + strand, within SM_b20420 at 434.268 kb on + strand, within SM_b20420 at 434.458 kb on + strand, within SM_b20420 at 434.459 kb on - strand, within SM_b20420 at 434.459 kb on - strand, within SM_b20420 at 434.459 kb on - strand, within SM_b20420 at 434.462 kb on + strand, within SM_b20420 at 434.462 kb on + strand, within SM_b20420 at 434.484 kb on + strand, within SM_b20420 at 434.485 kb on - strand at 434.538 kb on - strand, within SM_b20420 at 434.544 kb on + strand, within SM_b20420 at 434.559 kb on + strand at 434.559 kb on + strand at 434.560 kb on - strand at 434.560 kb on - strand at 434.560 kb on - strand at 434.560 kb on - strand at 434.617 kb on - strand at 434.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 433,039 + SM_b20419 0.21 -0.5 433,057 + SM_b20419 0.22 +0.7 433,057 + SM_b20419 0.22 +0.1 433,090 + SM_b20419 0.26 +0.5 433,115 + SM_b20419 0.28 +1.0 433,132 + SM_b20419 0.30 +0.3 433,133 - SM_b20419 0.30 -0.3 433,389 - SM_b20419 0.54 -0.3 433,389 - SM_b20419 0.54 +0.2 433,389 - SM_b20419 0.54 -1.0 433,389 - SM_b20419 0.54 +0.2 433,642 + SM_b20419 0.78 -1.3 433,643 - SM_b20419 0.78 +0.3 433,727 + SM_b20419 0.86 +0.6 433,727 + SM_b20419 0.86 -0.0 433,728 - SM_b20419 0.86 -2.2 433,868 + +0.1 434,003 - +0.5 434,003 - -2.9 434,003 - +0.5 434,004 + +0.3 434,011 + -1.1 434,089 + SM_b20420 0.15 +0.7 434,090 - SM_b20420 0.16 +1.9 434,090 - SM_b20420 0.16 -0.7 434,202 + SM_b20420 0.33 +0.3 434,202 + SM_b20420 0.33 +0.1 434,203 - SM_b20420 0.34 +2.5 434,203 - SM_b20420 0.34 +1.8 434,217 + SM_b20420 0.36 +1.2 434,234 + SM_b20420 0.39 -1.0 434,234 + SM_b20420 0.39 +0.3 434,235 - SM_b20420 0.39 -0.4 434,268 + SM_b20420 0.44 -0.1 434,268 + SM_b20420 0.44 +0.1 434,268 + SM_b20420 0.44 -0.4 434,458 + SM_b20420 0.74 +0.4 434,459 - SM_b20420 0.74 +0.5 434,459 - SM_b20420 0.74 -1.0 434,459 - SM_b20420 0.74 +0.6 434,462 + SM_b20420 0.75 -2.0 434,462 + SM_b20420 0.75 +0.8 434,484 + SM_b20420 0.78 +1.5 434,485 - +2.4 434,538 - SM_b20420 0.87 -0.1 434,544 + SM_b20420 0.88 +0.4 434,559 + +0.0 434,559 + -1.5 434,560 - +0.5 434,560 - -3.5 434,560 - +0.2 434,560 - +0.5 434,617 - +3.0 434,703 - -2.5
Or see this region's nucleotide sequence