Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20417

Experiment: Sisomicin 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20416 and SM_b20417 are separated by 117 nucleotidesSM_b20417 and SM_b20418 are separated by 8 nucleotidesSM_b20418 and SM_b20419 overlap by 1 nucleotides SM_b20416: SM_b20416 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 429,673 to 430,965 _b20416 SM_b20417: SM_b20417 - glycerol-3-phosphate ABC transporter permease, at 431,083 to 431,964 _b20417 SM_b20418: SM_b20418 - glycerol-3-phosphate ABC transporter permease, at 431,973 to 432,821 _b20418 SM_b20419: SM_b20419 - glycerol-3-phosphate ABC transporter ATP-binding protein, at 432,821 to 433,870 _b20419 Position (kb) 431 432Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 430.083 kb on + strand, within SM_b20416at 430.085 kb on - strand, within SM_b20416at 430.291 kb on + strand, within SM_b20416at 430.292 kb on - strand, within SM_b20416at 430.355 kb on - strand, within SM_b20416at 430.420 kb on - strand, within SM_b20416at 430.537 kb on + strand, within SM_b20416at 430.540 kb on + strand, within SM_b20416at 430.540 kb on + strand, within SM_b20416at 430.540 kb on + strand, within SM_b20416at 430.618 kb on + strand, within SM_b20416at 430.618 kb on + strand, within SM_b20416at 430.618 kb on + strand, within SM_b20416at 430.618 kb on - strand, within SM_b20416at 430.619 kb on - strand, within SM_b20416at 430.695 kb on + strand, within SM_b20416at 430.695 kb on + strand, within SM_b20416at 430.695 kb on + strand, within SM_b20416at 430.695 kb on + strand, within SM_b20416at 430.696 kb on - strand, within SM_b20416at 430.696 kb on - strand, within SM_b20416at 430.718 kb on - strand, within SM_b20416at 430.718 kb on - strand, within SM_b20416at 430.745 kb on - strand, within SM_b20416at 430.745 kb on - strand, within SM_b20416at 430.845 kb on + strandat 431.119 kb on + strandat 431.120 kb on - strandat 431.120 kb on - strandat 431.189 kb on - strand, within SM_b20417at 431.420 kb on - strand, within SM_b20417at 431.420 kb on - strand, within SM_b20417at 431.492 kb on - strand, within SM_b20417at 431.492 kb on - strand, within SM_b20417at 431.492 kb on - strand, within SM_b20417at 431.493 kb on + strand, within SM_b20417at 431.493 kb on + strand, within SM_b20417at 431.749 kb on + strand, within SM_b20417at 431.750 kb on - strand, within SM_b20417at 431.750 kb on - strand, within SM_b20417at 431.764 kb on - strand, within SM_b20417at 431.828 kb on - strand, within SM_b20417at 431.828 kb on - strand, within SM_b20417at 431.836 kb on + strand, within SM_b20417at 431.836 kb on + strand, within SM_b20417at 431.836 kb on + strand, within SM_b20417at 431.837 kb on - strand, within SM_b20417at 431.837 kb on - strand, within SM_b20417at 431.838 kb on + strand, within SM_b20417at 431.838 kb on + strand, within SM_b20417at 431.957 kb on - strandat 432.001 kb on + strandat 432.054 kb on + strandat 432.054 kb on + strandat 432.054 kb on + strandat 432.054 kb on + strandat 432.055 kb on - strandat 432.055 kb on - strandat 432.057 kb on + strandat 432.057 kb on + strandat 432.058 kb on - strand, within SM_b20418at 432.060 kb on - strand, within SM_b20418at 432.108 kb on - strand, within SM_b20418at 432.145 kb on - strand, within SM_b20418at 432.373 kb on - strand, within SM_b20418at 432.373 kb on - strand, within SM_b20418at 432.409 kb on - strand, within SM_b20418at 432.409 kb on - strand, within SM_b20418at 432.409 kb on - strand, within SM_b20418at 432.572 kb on + strand, within SM_b20418at 432.603 kb on + strand, within SM_b20418at 432.604 kb on - strand, within SM_b20418at 432.618 kb on + strand, within SM_b20418at 432.619 kb on - strand, within SM_b20418at 432.720 kb on + strand, within SM_b20418at 432.720 kb on + strand, within SM_b20418at 432.720 kb on + strand, within SM_b20418at 432.721 kb on - strand, within SM_b20418at 432.721 kb on - strand, within SM_b20418at 432.819 kb on + strandat 432.820 kb on - strandat 432.857 kb on + strandat 432.857 kb on + strandat 432.857 kb on + strandat 432.858 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
remove
430,083 + SM_b20416 0.32 -0.5
430,085 - SM_b20416 0.32 +0.8
430,291 + SM_b20416 0.48 +0.1
430,292 - SM_b20416 0.48 -0.0
430,355 - SM_b20416 0.53 +2.0
430,420 - SM_b20416 0.58 -0.0
430,537 + SM_b20416 0.67 -0.2
430,540 + SM_b20416 0.67 +1.3
430,540 + SM_b20416 0.67 +0.5
430,540 + SM_b20416 0.67 +0.7
430,618 + SM_b20416 0.73 +1.2
430,618 + SM_b20416 0.73 +0.5
430,618 + SM_b20416 0.73 +0.4
430,618 - SM_b20416 0.73 +0.5
430,619 - SM_b20416 0.73 -0.1
430,695 + SM_b20416 0.79 +0.2
430,695 + SM_b20416 0.79 -0.2
430,695 + SM_b20416 0.79 -1.2
430,695 + SM_b20416 0.79 -1.0
430,696 - SM_b20416 0.79 +0.0
430,696 - SM_b20416 0.79 -0.0
430,718 - SM_b20416 0.81 -0.0
430,718 - SM_b20416 0.81 -0.2
430,745 - SM_b20416 0.83 +0.2
430,745 - SM_b20416 0.83 -0.1
430,845 + -0.7
431,119 + +0.1
431,120 - -1.6
431,120 - -0.8
431,189 - SM_b20417 0.12 -0.3
431,420 - SM_b20417 0.38 -2.0
431,420 - SM_b20417 0.38 +0.2
431,492 - SM_b20417 0.46 -1.5
431,492 - SM_b20417 0.46 +1.0
431,492 - SM_b20417 0.46 -0.4
431,493 + SM_b20417 0.46 +0.5
431,493 + SM_b20417 0.46 -0.4
431,749 + SM_b20417 0.76 -0.9
431,750 - SM_b20417 0.76 +0.1
431,750 - SM_b20417 0.76 +0.2
431,764 - SM_b20417 0.77 -0.4
431,828 - SM_b20417 0.84 +0.2
431,828 - SM_b20417 0.84 -2.5
431,836 + SM_b20417 0.85 +0.1
431,836 + SM_b20417 0.85 -0.8
431,836 + SM_b20417 0.85 +0.8
431,837 - SM_b20417 0.85 +0.1
431,837 - SM_b20417 0.85 -0.6
431,838 + SM_b20417 0.86 -1.0
431,838 + SM_b20417 0.86 -0.7
431,957 - -0.3
432,001 + -2.2
432,054 + +0.4
432,054 + -2.4
432,054 + -0.4
432,054 + +0.3
432,055 - -0.0
432,055 - -1.9
432,057 + -0.4
432,057 + -4.1
432,058 - SM_b20418 0.10 +0.4
432,060 - SM_b20418 0.10 -0.7
432,108 - SM_b20418 0.16 -0.8
432,145 - SM_b20418 0.20 +0.5
432,373 - SM_b20418 0.47 +1.4
432,373 - SM_b20418 0.47 +0.3
432,409 - SM_b20418 0.51 +0.2
432,409 - SM_b20418 0.51 -0.3
432,409 - SM_b20418 0.51 -0.2
432,572 + SM_b20418 0.71 -2.4
432,603 + SM_b20418 0.74 -0.8
432,604 - SM_b20418 0.74 +1.1
432,618 + SM_b20418 0.76 -0.5
432,619 - SM_b20418 0.76 +0.2
432,720 + SM_b20418 0.88 -1.8
432,720 + SM_b20418 0.88 +0.8
432,720 + SM_b20418 0.88 -3.9
432,721 - SM_b20418 0.88 +1.2
432,721 - SM_b20418 0.88 -0.2
432,819 + +0.2
432,820 - +1.2
432,857 + -0.6
432,857 + +0.0
432,857 + +0.3
432,858 - +0.2

Or see this region's nucleotide sequence