Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20293 and SM_b20294 are separated by 131 nucleotides SM_b20294 and SM_b20295 are separated by 28 nucleotides SM_b20295 and SM_b20296 are separated by 55 nucleotides SM_b20296 and SM_b20297 are separated by 0 nucleotides
SM_b20293: SM_b20293 - hypothetical protein, at 300,703 to 301,062
_b20293
SM_b20294: SM_b20294 - transcriptional regulator NanR, at 301,194 to 301,895
_b20294
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
SM_b20296: SM_b20296 - permease, at 302,951 to 303,469
_b20296
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
Position (kb) 301
302
303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 301.060 kb on + strand at 301.061 kb on - strand at 301.061 kb on - strand at 301.273 kb on - strand, within SM_b20294 at 301.357 kb on - strand, within SM_b20294 at 301.871 kb on + strand at 301.872 kb on - strand at 301.872 kb on - strand at 301.876 kb on - strand at 301.907 kb on + strand at 302.022 kb on + strand, within SM_b20295 at 302.130 kb on + strand, within SM_b20295 at 302.242 kb on + strand, within SM_b20295 at 302.243 kb on - strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.833 kb on + strand at 303.176 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.269 kb on + strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.461 kb on + strand at 303.462 kb on - strand at 303.462 kb on - strand at 303.467 kb on + strand at 303.468 kb on - strand at 303.554 kb on + strand at 303.555 kb on - strand at 303.725 kb on - strand, within SM_b20297 at 303.725 kb on - strand, within SM_b20297
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 301,060 + +0.7 301,061 - -0.1 301,061 - -0.3 301,273 - SM_b20294 0.11 +1.4 301,357 - SM_b20294 0.23 -2.0 301,871 + -0.2 301,872 - -0.8 301,872 - -0.0 301,876 - -0.1 301,907 + -0.8 302,022 + SM_b20295 0.10 +0.6 302,130 + SM_b20295 0.21 +0.8 302,242 + SM_b20295 0.33 +0.5 302,243 - SM_b20295 0.33 -1.0 302,451 + SM_b20295 0.54 +2.4 302,451 + SM_b20295 0.54 -0.4 302,452 - SM_b20295 0.54 -0.9 302,452 - SM_b20295 0.54 -1.3 302,452 - SM_b20295 0.54 -0.5 302,506 + SM_b20295 0.60 -0.0 302,506 + SM_b20295 0.60 -0.8 302,506 + SM_b20295 0.60 -1.1 302,507 - SM_b20295 0.60 +1.2 302,507 - SM_b20295 0.60 +0.8 302,833 + +0.8 303,176 - SM_b20296 0.43 -0.0 303,267 - SM_b20296 0.61 -0.5 303,267 - SM_b20296 0.61 -1.1 303,269 + SM_b20296 0.61 +1.2 303,270 - SM_b20296 0.61 -0.3 303,270 - SM_b20296 0.61 -0.8 303,461 + -0.1 303,462 - +0.1 303,462 - -0.3 303,467 + -2.0 303,468 - -0.1 303,554 + -0.8 303,555 - -0.8 303,725 - SM_b20297 0.20 +1.3 303,725 - SM_b20297 0.20 -1.2
Or see this region's nucleotide sequence