Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20245 and SM_b20246 are separated by 333 nucleotides SM_b20246 and SM_b20247 are separated by 4 nucleotides
SM_b20245: SM_b20245 - UDP-glucose 4-epimerase, at 249,858 to 250,964
_b20245
SM_b20246: SM_b20246 - oxidoreductase, at 251,298 to 252,290
_b20246
SM_b20247: SM_b20247 - oxidoreductase, at 252,295 to 253,308
_b20247
Position (kb) 251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 250.305 kb on - strand, within SM_b20245 at 250.307 kb on - strand, within SM_b20245 at 250.307 kb on - strand, within SM_b20245 at 250.389 kb on + strand, within SM_b20245 at 250.389 kb on + strand, within SM_b20245 at 250.391 kb on + strand, within SM_b20245 at 250.391 kb on + strand, within SM_b20245 at 250.392 kb on - strand, within SM_b20245 at 250.414 kb on + strand, within SM_b20245 at 250.415 kb on - strand, within SM_b20245 at 250.415 kb on - strand, within SM_b20245 at 250.430 kb on - strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.571 kb on + strand, within SM_b20245 at 250.572 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.580 kb on - strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.794 kb on + strand, within SM_b20245 at 250.795 kb on - strand, within SM_b20245 at 250.888 kb on + strand at 250.888 kb on + strand at 250.888 kb on + strand at 250.888 kb on + strand at 250.889 kb on - strand at 250.889 kb on - strand at 250.889 kb on - strand at 250.889 kb on - strand at 250.953 kb on + strand at 250.953 kb on + strand at 250.964 kb on + strand at 250.964 kb on + strand at 250.965 kb on - strand at 250.994 kb on - strand at 251.102 kb on - strand at 251.312 kb on - strand at 251.312 kb on - strand at 251.371 kb on + strand at 251.452 kb on + strand, within SM_b20246 at 251.592 kb on + strand, within SM_b20246 at 251.593 kb on - strand, within SM_b20246 at 251.601 kb on + strand, within SM_b20246 at 251.602 kb on - strand, within SM_b20246 at 251.813 kb on - strand, within SM_b20246 at 252.236 kb on + strand at 252.697 kb on + strand, within SM_b20247 at 252.698 kb on - strand, within SM_b20247 at 252.787 kb on + strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.879 kb on - strand, within SM_b20247 at 252.973 kb on + strand, within SM_b20247 at 253.075 kb on + strand, within SM_b20247 at 253.075 kb on + strand, within SM_b20247 at 253.076 kb on - strand, within SM_b20247 at 253.101 kb on + strand, within SM_b20247 at 253.121 kb on - strand, within SM_b20247
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 250,305 - SM_b20245 0.40 +1.8 250,307 - SM_b20245 0.41 +0.9 250,307 - SM_b20245 0.41 -0.4 250,389 + SM_b20245 0.48 -0.2 250,389 + SM_b20245 0.48 -0.6 250,391 + SM_b20245 0.48 +0.7 250,391 + SM_b20245 0.48 +0.1 250,392 - SM_b20245 0.48 +0.2 250,414 + SM_b20245 0.50 +0.2 250,415 - SM_b20245 0.50 +0.5 250,415 - SM_b20245 0.50 -0.0 250,430 - SM_b20245 0.52 +0.8 250,571 + SM_b20245 0.64 +1.4 250,571 + SM_b20245 0.64 +0.4 250,571 + SM_b20245 0.64 +0.6 250,572 - SM_b20245 0.64 -3.4 250,580 - SM_b20245 0.65 +0.1 250,580 - SM_b20245 0.65 +0.7 250,580 - SM_b20245 0.65 +0.6 250,794 + SM_b20245 0.85 +0.3 250,794 + SM_b20245 0.85 -1.9 250,794 + SM_b20245 0.85 +0.2 250,795 - SM_b20245 0.85 +0.2 250,888 + -0.2 250,888 + -0.1 250,888 + -1.2 250,888 + +1.6 250,889 - -1.3 250,889 - -1.8 250,889 - +0.1 250,889 - +0.4 250,953 + +1.2 250,953 + -0.4 250,964 + +0.0 250,964 + -1.9 250,965 - -0.4 250,994 - +0.7 251,102 - -0.1 251,312 - -0.7 251,312 - +0.9 251,371 + +0.8 251,452 + SM_b20246 0.16 +0.3 251,592 + SM_b20246 0.30 +0.4 251,593 - SM_b20246 0.30 +0.1 251,601 + SM_b20246 0.31 -0.5 251,602 - SM_b20246 0.31 -1.1 251,813 - SM_b20246 0.52 +0.8 252,236 + +0.2 252,697 + SM_b20247 0.40 -0.6 252,698 - SM_b20247 0.40 +0.7 252,787 + SM_b20247 0.49 -1.1 252,879 - SM_b20247 0.58 -0.8 252,879 - SM_b20247 0.58 +0.5 252,879 - SM_b20247 0.58 +0.5 252,973 + SM_b20247 0.67 -0.1 253,075 + SM_b20247 0.77 -0.6 253,075 + SM_b20247 0.77 +0.4 253,076 - SM_b20247 0.77 -1.0 253,101 + SM_b20247 0.79 -1.3 253,121 - SM_b20247 0.81 -0.0
Or see this region's nucleotide sequence