Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20231 and SM_b20232 are separated by 57 nucleotides SM_b20232 and SM_b20233 overlap by 11 nucleotides SM_b20233 and SM_b20234 are separated by 30 nucleotides
SM_b20231: SM_b20231 - sugar ABC transporter substrate-binding protein, at 236,096 to 237,451
_b20231
SM_b20232: SM_b20232 - sugar ABC transporter permease, at 237,509 to 238,453
_b20232
SM_b20233: SM_b20233 - sugar ABC transporter permease, at 238,443 to 239,291
_b20233
SM_b20234: SM_b20234 - hypothetical protein, at 239,322 to 240,518
_b20234
Position (kb) 237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 236.600 kb on + strand, within SM_b20231 at 236.601 kb on - strand, within SM_b20231 at 236.738 kb on + strand, within SM_b20231 at 236.939 kb on + strand, within SM_b20231 at 237.047 kb on + strand, within SM_b20231 at 237.047 kb on + strand, within SM_b20231 at 237.047 kb on + strand, within SM_b20231 at 237.047 kb on + strand, within SM_b20231 at 237.048 kb on - strand, within SM_b20231 at 237.048 kb on - strand, within SM_b20231 at 237.048 kb on - strand, within SM_b20231 at 237.324 kb on - strand at 237.324 kb on - strand at 237.428 kb on + strand at 237.429 kb on - strand at 237.657 kb on + strand, within SM_b20232 at 237.702 kb on - strand, within SM_b20232 at 237.702 kb on - strand, within SM_b20232 at 237.702 kb on - strand, within SM_b20232 at 237.725 kb on + strand, within SM_b20232 at 237.725 kb on + strand, within SM_b20232 at 237.726 kb on - strand, within SM_b20232 at 237.813 kb on + strand, within SM_b20232 at 237.813 kb on + strand, within SM_b20232 at 237.814 kb on - strand, within SM_b20232 at 237.814 kb on - strand, within SM_b20232 at 237.957 kb on + strand, within SM_b20232 at 238.041 kb on + strand, within SM_b20232 at 238.042 kb on - strand, within SM_b20232 at 238.070 kb on + strand, within SM_b20232 at 238.070 kb on + strand, within SM_b20232 at 238.070 kb on + strand, within SM_b20232 at 238.115 kb on + strand, within SM_b20232 at 238.262 kb on + strand, within SM_b20232 at 238.262 kb on + strand, within SM_b20232 at 238.263 kb on - strand, within SM_b20232 at 238.263 kb on - strand, within SM_b20232 at 238.263 kb on - strand, within SM_b20232 at 238.315 kb on + strand, within SM_b20232 at 238.316 kb on - strand at 238.316 kb on - strand, within SM_b20232 at 238.319 kb on + strand, within SM_b20232 at 238.320 kb on - strand, within SM_b20232 at 238.320 kb on - strand, within SM_b20232 at 238.452 kb on - strand at 238.611 kb on - strand, within SM_b20233 at 238.644 kb on + strand, within SM_b20233 at 238.644 kb on + strand, within SM_b20233 at 238.644 kb on + strand, within SM_b20233 at 238.644 kb on + strand, within SM_b20233 at 238.645 kb on - strand, within SM_b20233 at 238.645 kb on - strand, within SM_b20233 at 238.648 kb on + strand, within SM_b20233 at 238.649 kb on - strand, within SM_b20233 at 238.649 kb on - strand, within SM_b20233 at 238.649 kb on - strand, within SM_b20233 at 238.674 kb on + strand, within SM_b20233 at 238.674 kb on + strand, within SM_b20233 at 238.674 kb on + strand, within SM_b20233 at 238.675 kb on - strand, within SM_b20233 at 238.692 kb on + strand, within SM_b20233 at 238.942 kb on - strand, within SM_b20233 at 238.944 kb on + strand, within SM_b20233 at 238.945 kb on - strand, within SM_b20233 at 238.945 kb on - strand, within SM_b20233 at 238.945 kb on - strand, within SM_b20233 at 238.945 kb on - strand, within SM_b20233 at 238.945 kb on - strand, within SM_b20233 at 239.187 kb on + strand, within SM_b20233 at 239.188 kb on - strand, within SM_b20233 at 239.188 kb on - strand, within SM_b20233 at 239.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 236,600 + SM_b20231 0.37 -0.9 236,601 - SM_b20231 0.37 -0.0 236,738 + SM_b20231 0.47 -0.8 236,939 + SM_b20231 0.62 +0.5 237,047 + SM_b20231 0.70 -1.1 237,047 + SM_b20231 0.70 +0.6 237,047 + SM_b20231 0.70 +0.5 237,047 + SM_b20231 0.70 +0.8 237,048 - SM_b20231 0.70 +0.6 237,048 - SM_b20231 0.70 +2.6 237,048 - SM_b20231 0.70 +1.0 237,324 - +0.7 237,324 - +0.5 237,428 + -0.2 237,429 - -1.0 237,657 + SM_b20232 0.16 -1.4 237,702 - SM_b20232 0.20 +0.1 237,702 - SM_b20232 0.20 -0.1 237,702 - SM_b20232 0.20 -1.2 237,725 + SM_b20232 0.23 -0.1 237,725 + SM_b20232 0.23 +1.4 237,726 - SM_b20232 0.23 +0.5 237,813 + SM_b20232 0.32 -1.2 237,813 + SM_b20232 0.32 +0.6 237,814 - SM_b20232 0.32 -0.1 237,814 - SM_b20232 0.32 +0.0 237,957 + SM_b20232 0.47 +1.0 238,041 + SM_b20232 0.56 +1.0 238,042 - SM_b20232 0.56 -0.3 238,070 + SM_b20232 0.59 +0.6 238,070 + SM_b20232 0.59 +0.2 238,070 + SM_b20232 0.59 -0.2 238,115 + SM_b20232 0.64 +1.2 238,262 + SM_b20232 0.80 -0.4 238,262 + SM_b20232 0.80 -0.5 238,263 - SM_b20232 0.80 -2.3 238,263 - SM_b20232 0.80 +0.2 238,263 - SM_b20232 0.80 -0.0 238,315 + SM_b20232 0.85 +0.2 238,316 - +0.8 238,316 - SM_b20232 0.85 +0.1 238,319 + SM_b20232 0.86 +0.2 238,320 - SM_b20232 0.86 -0.5 238,320 - SM_b20232 0.86 +0.1 238,452 - -3.3 238,611 - SM_b20233 0.20 +0.3 238,644 + SM_b20233 0.24 +2.4 238,644 + SM_b20233 0.24 +0.9 238,644 + SM_b20233 0.24 -1.2 238,644 + SM_b20233 0.24 +0.2 238,645 - SM_b20233 0.24 +0.7 238,645 - SM_b20233 0.24 +0.9 238,648 + SM_b20233 0.24 -0.0 238,649 - SM_b20233 0.24 +0.3 238,649 - SM_b20233 0.24 -0.0 238,649 - SM_b20233 0.24 -0.1 238,674 + SM_b20233 0.27 +1.2 238,674 + SM_b20233 0.27 -0.0 238,674 + SM_b20233 0.27 +0.2 238,675 - SM_b20233 0.27 +0.6 238,692 + SM_b20233 0.29 -1.4 238,942 - SM_b20233 0.59 -0.9 238,944 + SM_b20233 0.59 +0.9 238,945 - SM_b20233 0.59 +1.0 238,945 - SM_b20233 0.59 +0.8 238,945 - SM_b20233 0.59 +0.9 238,945 - SM_b20233 0.59 +1.2 238,945 - SM_b20233 0.59 -0.1 239,187 + SM_b20233 0.88 -0.4 239,188 - SM_b20233 0.88 -0.5 239,188 - SM_b20233 0.88 +0.1 239,305 - +0.8
Or see this region's nucleotide sequence