Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20231

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20230 and SM_b20231 are separated by 59 nucleotidesSM_b20231 and SM_b20232 are separated by 57 nucleotides SM_b20230: SM_b20230 - smc22-r protein, at 235,032 to 236,036 _b20230 SM_b20231: SM_b20231 - sugar ABC transporter substrate-binding protein, at 236,096 to 237,451 _b20231 SM_b20232: SM_b20232 - sugar ABC transporter permease, at 237,509 to 238,453 _b20232 SM_b20233: SM_b20233 - sugar ABC transporter permease, at 238,443 to 239,291 _b20233 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 235.130 kb on + strandat 235.130 kb on + strandat 235.131 kb on - strandat 235.164 kb on + strand, within SM_b20230at 235.165 kb on - strand, within SM_b20230at 235.168 kb on + strand, within SM_b20230at 235.252 kb on - strand, within SM_b20230at 235.264 kb on + strand, within SM_b20230at 235.306 kb on + strand, within SM_b20230at 235.307 kb on - strand, within SM_b20230at 235.307 kb on - strand, within SM_b20230at 235.352 kb on + strand, within SM_b20230at 235.376 kb on - strand, within SM_b20230at 235.376 kb on - strand, within SM_b20230at 235.450 kb on + strand, within SM_b20230at 235.450 kb on + strand, within SM_b20230at 235.450 kb on + strand, within SM_b20230at 235.451 kb on - strand, within SM_b20230at 235.451 kb on - strand, within SM_b20230at 235.531 kb on - strand, within SM_b20230at 235.545 kb on + strand, within SM_b20230at 235.692 kb on + strand, within SM_b20230at 235.692 kb on + strand, within SM_b20230at 235.692 kb on + strand, within SM_b20230at 235.693 kb on - strand, within SM_b20230at 235.693 kb on - strand, within SM_b20230at 235.693 kb on - strand, within SM_b20230at 235.698 kb on - strand, within SM_b20230at 235.754 kb on - strand, within SM_b20230at 235.754 kb on - strand, within SM_b20230at 235.881 kb on + strand, within SM_b20230at 236.074 kb on - strandat 236.199 kb on - strandat 236.255 kb on + strand, within SM_b20231at 236.256 kb on - strand, within SM_b20231at 236.369 kb on + strand, within SM_b20231at 236.370 kb on - strand, within SM_b20231at 236.370 kb on - strand, within SM_b20231at 236.371 kb on + strand, within SM_b20231at 236.371 kb on + strand, within SM_b20231at 236.424 kb on + strand, within SM_b20231at 236.424 kb on + strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.456 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.460 kb on - strand, within SM_b20231at 236.461 kb on + strand, within SM_b20231at 236.461 kb on + strand, within SM_b20231at 236.600 kb on + strand, within SM_b20231at 236.601 kb on - strand, within SM_b20231at 236.738 kb on + strand, within SM_b20231at 236.939 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.047 kb on + strand, within SM_b20231at 237.048 kb on - strand, within SM_b20231at 237.048 kb on - strand, within SM_b20231at 237.048 kb on - strand, within SM_b20231at 237.324 kb on - strandat 237.324 kb on - strandat 237.428 kb on + strandat 237.429 kb on - strandat 237.657 kb on + strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.725 kb on + strand, within SM_b20232at 237.725 kb on + strand, within SM_b20232at 237.726 kb on - strand, within SM_b20232at 237.813 kb on + strand, within SM_b20232at 237.813 kb on + strand, within SM_b20232at 237.814 kb on - strand, within SM_b20232at 237.814 kb on - strand, within SM_b20232at 237.957 kb on + strand, within SM_b20232at 238.041 kb on + strand, within SM_b20232at 238.042 kb on - strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.115 kb on + strand, within SM_b20232at 238.262 kb on + strand, within SM_b20232at 238.262 kb on + strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.315 kb on + strand, within SM_b20232at 238.316 kb on - strandat 238.316 kb on - strand, within SM_b20232at 238.319 kb on + strand, within SM_b20232at 238.320 kb on - strand, within SM_b20232at 238.320 kb on - strand, within SM_b20232

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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235,130 + -1.4
235,130 + +1.3
235,131 - -0.5
235,164 + SM_b20230 0.13 +5.1
235,165 - SM_b20230 0.13 +0.2
235,168 + SM_b20230 0.14 -0.2
235,252 - SM_b20230 0.22 -0.4
235,264 + SM_b20230 0.23 +0.0
235,306 + SM_b20230 0.27 -0.0
235,307 - SM_b20230 0.27 +0.7
235,307 - SM_b20230 0.27 +0.2
235,352 + SM_b20230 0.32 -0.2
235,376 - SM_b20230 0.34 +0.3
235,376 - SM_b20230 0.34 -1.9
235,450 + SM_b20230 0.42 -0.9
235,450 + SM_b20230 0.42 -1.2
235,450 + SM_b20230 0.42 -2.0
235,451 - SM_b20230 0.42 +0.5
235,451 - SM_b20230 0.42 -1.0
235,531 - SM_b20230 0.50 +0.1
235,545 + SM_b20230 0.51 -1.2
235,692 + SM_b20230 0.66 +0.5
235,692 + SM_b20230 0.66 +2.1
235,692 + SM_b20230 0.66 -1.8
235,693 - SM_b20230 0.66 -0.6
235,693 - SM_b20230 0.66 +0.2
235,693 - SM_b20230 0.66 +1.7
235,698 - SM_b20230 0.66 -0.7
235,754 - SM_b20230 0.72 +0.3
235,754 - SM_b20230 0.72 -1.1
235,881 + SM_b20230 0.84 -0.9
236,074 - +0.8
236,199 - +0.3
236,255 + SM_b20231 0.12 -1.1
236,256 - SM_b20231 0.12 -0.5
236,369 + SM_b20231 0.20 -0.3
236,370 - SM_b20231 0.20 +1.0
236,370 - SM_b20231 0.20 -0.1
236,371 + SM_b20231 0.20 +0.5
236,371 + SM_b20231 0.20 -2.6
236,424 + SM_b20231 0.24 -1.5
236,424 + SM_b20231 0.24 -0.9
236,425 - SM_b20231 0.24 +2.8
236,425 - SM_b20231 0.24 -0.2
236,425 - SM_b20231 0.24 +0.0
236,425 - SM_b20231 0.24 -2.5
236,456 + SM_b20231 0.27 -0.3
236,459 + SM_b20231 0.27 -0.6
236,459 + SM_b20231 0.27 -0.2
236,459 + SM_b20231 0.27 +0.4
236,459 + SM_b20231 0.27 -0.8
236,459 + SM_b20231 0.27 +0.0
236,459 + SM_b20231 0.27 -0.6
236,459 + SM_b20231 0.27 -0.2
236,460 - SM_b20231 0.27 +0.1
236,461 + SM_b20231 0.27 -0.5
236,461 + SM_b20231 0.27 -0.2
236,600 + SM_b20231 0.37 -0.9
236,601 - SM_b20231 0.37 -0.0
236,738 + SM_b20231 0.47 -0.8
236,939 + SM_b20231 0.62 +0.5
237,047 + SM_b20231 0.70 -1.1
237,047 + SM_b20231 0.70 +0.6
237,047 + SM_b20231 0.70 +0.5
237,047 + SM_b20231 0.70 +0.8
237,048 - SM_b20231 0.70 +0.6
237,048 - SM_b20231 0.70 +2.6
237,048 - SM_b20231 0.70 +1.0
237,324 - +0.7
237,324 - +0.5
237,428 + -0.2
237,429 - -1.0
237,657 + SM_b20232 0.16 -1.4
237,702 - SM_b20232 0.20 +0.1
237,702 - SM_b20232 0.20 -0.1
237,702 - SM_b20232 0.20 -1.2
237,725 + SM_b20232 0.23 -0.1
237,725 + SM_b20232 0.23 +1.4
237,726 - SM_b20232 0.23 +0.5
237,813 + SM_b20232 0.32 -1.2
237,813 + SM_b20232 0.32 +0.6
237,814 - SM_b20232 0.32 -0.1
237,814 - SM_b20232 0.32 +0.0
237,957 + SM_b20232 0.47 +1.0
238,041 + SM_b20232 0.56 +1.0
238,042 - SM_b20232 0.56 -0.3
238,070 + SM_b20232 0.59 +0.6
238,070 + SM_b20232 0.59 +0.2
238,070 + SM_b20232 0.59 -0.2
238,115 + SM_b20232 0.64 +1.2
238,262 + SM_b20232 0.80 -0.4
238,262 + SM_b20232 0.80 -0.5
238,263 - SM_b20232 0.80 -2.3
238,263 - SM_b20232 0.80 +0.2
238,263 - SM_b20232 0.80 -0.0
238,315 + SM_b20232 0.85 +0.2
238,316 - +0.8
238,316 - SM_b20232 0.85 +0.1
238,319 + SM_b20232 0.86 +0.2
238,320 - SM_b20232 0.86 -0.5
238,320 - SM_b20232 0.86 +0.1

Or see this region's nucleotide sequence