Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20152 and SM_b20153 are separated by 83 nucleotides SM_b20153 and SM_b20154 are separated by 50 nucleotides
SM_b20152: SM_b20152 - hypothetical protein, at 167,256 to 168,974
_b20152
SM_b20153: SM_b20153 - hypothetical protein, at 169,058 to 170,701
_b20153
SM_b20154: SM_b20154 - transcriptional regulator, at 170,752 to 171,738
_b20154
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.315 kb on - strand, within SM_b20152 at 168.442 kb on - strand, within SM_b20152 at 168.442 kb on - strand, within SM_b20152 at 168.501 kb on + strand, within SM_b20152 at 168.502 kb on - strand, within SM_b20152 at 168.738 kb on + strand, within SM_b20152 at 168.777 kb on - strand, within SM_b20152 at 168.801 kb on + strand, within SM_b20152 at 168.874 kb on + strand at 168.992 kb on + strand at 169.046 kb on + strand at 169.046 kb on + strand at 169.046 kb on + strand at 169.400 kb on - strand, within SM_b20153 at 169.838 kb on + strand, within SM_b20153 at 169.838 kb on + strand, within SM_b20153 at 169.839 kb on - strand, within SM_b20153 at 169.860 kb on + strand, within SM_b20153 at 169.860 kb on + strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 169.861 kb on - strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.012 kb on + strand, within SM_b20153 at 170.159 kb on - strand, within SM_b20153 at 170.210 kb on + strand, within SM_b20153 at 170.210 kb on + strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.211 kb on - strand, within SM_b20153 at 170.236 kb on + strand, within SM_b20153 at 170.236 kb on + strand, within SM_b20153 at 170.274 kb on + strand, within SM_b20153 at 170.274 kb on + strand, within SM_b20153 at 170.275 kb on - strand, within SM_b20153 at 170.275 kb on - strand, within SM_b20153 at 170.279 kb on + strand, within SM_b20153 at 170.279 kb on + strand, within SM_b20153 at 170.280 kb on - strand, within SM_b20153 at 170.300 kb on - strand, within SM_b20153 at 170.395 kb on - strand, within SM_b20153 at 170.716 kb on - strand at 170.753 kb on + strand at 170.753 kb on + strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.754 kb on - strand at 170.886 kb on - strand, within SM_b20154 at 171.071 kb on + strand, within SM_b20154 at 171.071 kb on + strand, within SM_b20154 at 171.270 kb on + strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.416 kb on - strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.616 kb on + strand, within SM_b20154 at 171.617 kb on - strand, within SM_b20154
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 168,315 - SM_b20152 0.62 -0.5 168,442 - SM_b20152 0.69 -0.1 168,442 - SM_b20152 0.69 -0.7 168,501 + SM_b20152 0.72 +0.8 168,502 - SM_b20152 0.72 +0.8 168,738 + SM_b20152 0.86 +0.1 168,777 - SM_b20152 0.88 -0.1 168,801 + SM_b20152 0.90 +0.3 168,874 + -0.5 168,992 + +1.0 169,046 + +1.6 169,046 + -0.6 169,046 + -0.5 169,400 - SM_b20153 0.21 -0.6 169,838 + SM_b20153 0.47 +1.7 169,838 + SM_b20153 0.47 -0.7 169,839 - SM_b20153 0.48 -1.1 169,860 + SM_b20153 0.49 +0.4 169,860 + SM_b20153 0.49 -1.1 169,861 - SM_b20153 0.49 +0.9 169,861 - SM_b20153 0.49 -0.1 169,861 - SM_b20153 0.49 +0.4 169,861 - SM_b20153 0.49 -0.4 170,012 + SM_b20153 0.58 -0.8 170,012 + SM_b20153 0.58 +0.8 170,012 + SM_b20153 0.58 -3.0 170,159 - SM_b20153 0.67 -0.4 170,210 + SM_b20153 0.70 -2.6 170,210 + SM_b20153 0.70 -3.2 170,211 - SM_b20153 0.70 -0.4 170,211 - SM_b20153 0.70 -0.4 170,211 - SM_b20153 0.70 -0.6 170,236 + SM_b20153 0.72 -0.3 170,236 + SM_b20153 0.72 -1.0 170,274 + SM_b20153 0.74 -1.8 170,274 + SM_b20153 0.74 -2.3 170,275 - SM_b20153 0.74 -1.6 170,275 - SM_b20153 0.74 -0.1 170,279 + SM_b20153 0.74 -0.3 170,279 + SM_b20153 0.74 -3.2 170,280 - SM_b20153 0.74 -0.5 170,300 - SM_b20153 0.76 -1.7 170,395 - SM_b20153 0.81 +0.2 170,716 - -0.1 170,753 + -0.7 170,753 + -1.2 170,754 - +0.3 170,754 - +0.1 170,754 - -2.5 170,754 - -0.6 170,886 - SM_b20154 0.14 -0.3 171,071 + SM_b20154 0.32 -1.2 171,071 + SM_b20154 0.32 +1.0 171,270 + SM_b20154 0.52 +1.3 171,416 - SM_b20154 0.67 +0.7 171,416 - SM_b20154 0.67 -0.1 171,616 + SM_b20154 0.88 +1.1 171,616 + SM_b20154 0.88 +0.3 171,616 + SM_b20154 0.88 +0.1 171,617 - SM_b20154 0.88 -0.4
Or see this region's nucleotide sequence