Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20115 and SM_b20116 are separated by 134 nucleotides SM_b20116 and SM_b20117 are separated by 129 nucleotides
SM_b20115: SM_b20115 - dihydroxy-acid dehydratase, at 126,396 to 128,117
_b20115
SM_b20116: SM_b20116 - hypothetical protein, at 128,252 to 130,456
_b20116
SM_b20117: SM_b20117 - sugar transferase, at 130,586 to 131,686
_b20117
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 127.430 kb on + strand, within SM_b20115 at 127.430 kb on + strand, within SM_b20115 at 127.431 kb on - strand, within SM_b20115 at 127.547 kb on - strand, within SM_b20115 at 127.622 kb on - strand, within SM_b20115 at 127.770 kb on + strand, within SM_b20115 at 128.127 kb on + strand at 128.128 kb on - strand at 128.159 kb on + strand at 128.159 kb on + strand at 128.159 kb on + strand at 128.160 kb on - strand at 128.160 kb on - strand at 128.160 kb on - strand at 128.160 kb on - strand at 128.469 kb on + strand at 128.518 kb on - strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.561 kb on + strand, within SM_b20116 at 128.589 kb on + strand, within SM_b20116 at 128.590 kb on - strand, within SM_b20116 at 128.646 kb on + strand, within SM_b20116 at 128.706 kb on + strand, within SM_b20116 at 128.707 kb on - strand, within SM_b20116 at 128.795 kb on + strand, within SM_b20116 at 128.796 kb on - strand, within SM_b20116 at 128.901 kb on + strand, within SM_b20116 at 128.902 kb on - strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.042 kb on + strand, within SM_b20116 at 129.051 kb on - strand, within SM_b20116 at 129.163 kb on - strand, within SM_b20116 at 129.276 kb on + strand, within SM_b20116 at 129.580 kb on + strand, within SM_b20116 at 129.580 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 130.333 kb on + strand at 130.334 kb on - strand at 130.334 kb on - strand at 130.368 kb on + strand at 130.369 kb on - strand at 130.538 kb on + strand at 130.678 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 131.308 kb on - strand, within SM_b20117
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 127,430 + SM_b20115 0.60 -1.7 127,430 + SM_b20115 0.60 +0.9 127,431 - SM_b20115 0.60 +0.4 127,547 - SM_b20115 0.67 -0.2 127,622 - SM_b20115 0.71 -0.1 127,770 + SM_b20115 0.80 +0.2 128,127 + -0.2 128,128 - -0.7 128,159 + -0.3 128,159 + -0.2 128,159 + +0.8 128,160 - +1.4 128,160 - -0.7 128,160 - +0.4 128,160 - +0.5 128,469 + -0.6 128,518 - SM_b20116 0.12 +0.9 128,561 + SM_b20116 0.14 -1.2 128,561 + SM_b20116 0.14 -0.1 128,561 + SM_b20116 0.14 +1.0 128,561 + SM_b20116 0.14 +2.0 128,589 + SM_b20116 0.15 -2.6 128,590 - SM_b20116 0.15 +1.1 128,646 + SM_b20116 0.18 -0.2 128,706 + SM_b20116 0.21 +3.0 128,707 - SM_b20116 0.21 +1.6 128,795 + SM_b20116 0.25 -0.1 128,796 - SM_b20116 0.25 -0.2 128,901 + SM_b20116 0.29 +0.3 128,902 - SM_b20116 0.29 -0.6 129,042 + SM_b20116 0.36 +0.7 129,042 + SM_b20116 0.36 -0.2 129,042 + SM_b20116 0.36 -0.1 129,042 + SM_b20116 0.36 -0.3 129,051 - SM_b20116 0.36 +0.2 129,163 - SM_b20116 0.41 +0.6 129,276 + SM_b20116 0.46 +0.2 129,580 + SM_b20116 0.60 +1.4 129,580 + SM_b20116 0.60 +0.5 129,591 + SM_b20116 0.61 -0.7 129,591 + SM_b20116 0.61 +1.6 129,591 + SM_b20116 0.61 +0.8 129,591 + SM_b20116 0.61 -0.3 129,592 - SM_b20116 0.61 -0.7 129,592 - SM_b20116 0.61 -3.1 129,592 - SM_b20116 0.61 +0.8 130,333 + -1.2 130,334 - +0.3 130,334 - +1.6 130,368 + +0.1 130,369 - -0.0 130,538 + -0.2 130,678 - -0.3 130,690 - +1.5 130,690 - +1.0 130,690 - -0.5 131,308 - SM_b20117 0.66 -0.4
Or see this region's nucleotide sequence