Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20095

Experiment: Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20094 and SM_b20095 are separated by 24 nucleotidesSM_b20095 and SM_b20096 are separated by 28 nucleotidesSM_b20096 and SM_b20097 are separated by 1 nucleotides SM_b20094: SM_b20094 - phospholipase, at 101,410 to 103,182 _b20094 SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024 _b20095 SM_b20096: SM_b20096 - hypothetical protein, at 105,053 to 105,493 _b20096 SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724 _b20097 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 102.339 kb on + strand, within SM_b20094at 102.787 kb on + strand, within SM_b20094at 102.834 kb on + strand, within SM_b20094at 102.835 kb on - strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.851 kb on + strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.852 kb on - strand, within SM_b20094at 102.929 kb on - strand, within SM_b20094at 103.001 kb on - strand, within SM_b20094at 103.007 kb on + strandat 103.007 kb on + strandat 103.141 kb on + strandat 103.141 kb on + strandat 103.141 kb on + strandat 103.142 kb on - strandat 103.142 kb on - strandat 103.207 kb on - strandat 103.207 kb on - strandat 103.207 kb on - strandat 103.463 kb on - strand, within SM_b20095at 103.513 kb on + strand, within SM_b20095at 103.514 kb on - strand, within SM_b20095at 103.585 kb on + strand, within SM_b20095at 103.982 kb on + strand, within SM_b20095at 104.056 kb on + strand, within SM_b20095at 104.058 kb on + strand, within SM_b20095at 104.065 kb on + strand, within SM_b20095at 104.065 kb on + strand, within SM_b20095at 104.065 kb on + strand, within SM_b20095at 104.352 kb on + strand, within SM_b20095at 104.470 kb on + strand, within SM_b20095at 104.470 kb on + strand, within SM_b20095at 104.470 kb on + strand, within SM_b20095at 104.471 kb on - strand, within SM_b20095at 104.471 kb on - strand, within SM_b20095at 104.471 kb on - strand, within SM_b20095at 104.512 kb on + strand, within SM_b20095at 105.022 kb on + strandat 105.022 kb on + strandat 105.080 kb on - strandat 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.112 kb on + strand, within SM_b20096at 105.113 kb on - strand, within SM_b20096at 105.146 kb on + strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.147 kb on - strand, within SM_b20096at 105.383 kb on + strand, within SM_b20096at 105.383 kb on + strand, within SM_b20096at 105.479 kb on + strandat 105.480 kb on - strandat 105.491 kb on + strandat 105.492 kb on - strandat 105.518 kb on + strandat 105.519 kb on - strandat 105.519 kb on - strandat 105.740 kb on - strand, within SM_b20097at 105.740 kb on - strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.970 kb on + strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097at 105.971 kb on - strand, within SM_b20097

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml
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102,339 + SM_b20094 0.52 +0.7
102,787 + SM_b20094 0.78 -2.0
102,834 + SM_b20094 0.80 +1.7
102,835 - SM_b20094 0.80 -0.3
102,851 + SM_b20094 0.81 +0.4
102,851 + SM_b20094 0.81 +0.1
102,851 + SM_b20094 0.81 -1.3
102,851 + SM_b20094 0.81 +0.1
102,851 + SM_b20094 0.81 -0.9
102,851 + SM_b20094 0.81 -1.1
102,851 + SM_b20094 0.81 -0.5
102,851 + SM_b20094 0.81 +1.3
102,852 - SM_b20094 0.81 +0.3
102,852 - SM_b20094 0.81 -0.0
102,852 - SM_b20094 0.81 -0.7
102,852 - SM_b20094 0.81 +0.2
102,852 - SM_b20094 0.81 +0.5
102,852 - SM_b20094 0.81 -1.2
102,852 - SM_b20094 0.81 -0.1
102,852 - SM_b20094 0.81 +0.3
102,852 - SM_b20094 0.81 +0.0
102,929 - SM_b20094 0.86 -0.5
103,001 - SM_b20094 0.90 +0.1
103,007 + -0.3
103,007 + -0.2
103,141 + +0.3
103,141 + +0.6
103,141 + +0.6
103,142 - -1.1
103,142 - +0.8
103,207 - +0.6
103,207 - -0.3
103,207 - +0.2
103,463 - SM_b20095 0.14 +0.3
103,513 + SM_b20095 0.17 +1.5
103,514 - SM_b20095 0.17 -0.1
103,585 + SM_b20095 0.21 +1.1
103,982 + SM_b20095 0.43 -1.2
104,056 + SM_b20095 0.47 -2.5
104,058 + SM_b20095 0.47 +0.8
104,065 + SM_b20095 0.47 -0.3
104,065 + SM_b20095 0.47 -0.7
104,065 + SM_b20095 0.47 -0.1
104,352 + SM_b20095 0.63 +0.3
104,470 + SM_b20095 0.69 -1.2
104,470 + SM_b20095 0.69 -1.4
104,470 + SM_b20095 0.69 -0.5
104,471 - SM_b20095 0.70 -0.6
104,471 - SM_b20095 0.70 -1.6
104,471 - SM_b20095 0.70 +0.3
104,512 + SM_b20095 0.72 +0.1
105,022 + +0.3
105,022 + +1.5
105,080 - -1.0
105,112 + SM_b20096 0.13 +0.9
105,112 + SM_b20096 0.13 -3.4
105,112 + SM_b20096 0.13 +0.8
105,112 + SM_b20096 0.13 +0.5
105,112 + SM_b20096 0.13 -0.5
105,113 - SM_b20096 0.14 -2.2
105,146 + SM_b20096 0.21 +1.0
105,147 - SM_b20096 0.21 -1.0
105,147 - SM_b20096 0.21 -0.1
105,147 - SM_b20096 0.21 -0.5
105,147 - SM_b20096 0.21 -1.4
105,383 + SM_b20096 0.75 +0.0
105,383 + SM_b20096 0.75 +1.8
105,479 + +0.1
105,480 - -0.0
105,491 + +1.3
105,492 - -1.0
105,518 + -0.2
105,519 - -0.4
105,519 - -0.4
105,740 - SM_b20097 0.20 +0.9
105,740 - SM_b20097 0.20 -0.1
105,970 + SM_b20097 0.39 +0.5
105,970 + SM_b20097 0.39 -1.2
105,970 + SM_b20097 0.39 +0.8
105,970 + SM_b20097 0.39 -0.5
105,971 - SM_b20097 0.39 +0.1
105,971 - SM_b20097 0.39 +3.7
105,971 - SM_b20097 0.39 +0.7

Or see this region's nucleotide sequence