Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20033 and SM_b20034 are separated by 296 nucleotides SM_b20034 and SM_b20035 are separated by 10 nucleotides
SM_b20033: SM_b20033 - transcriptional regulator, at 43,775 to 44,437
_b20033
SM_b20034: SM_b20034 - ABC transporter, at 44,734 to 45,297
_b20034
SM_b20035: SM_b20035 - ABC transporter permease, at 45,308 to 46,588
_b20035
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1 at 43.777 kb on - strand at 43.777 kb on - strand at 43.813 kb on - strand at 43.813 kb on - strand at 44.068 kb on + strand, within SM_b20033 at 44.068 kb on + strand, within SM_b20033 at 44.250 kb on + strand, within SM_b20033 at 44.277 kb on + strand, within SM_b20033 at 44.277 kb on + strand, within SM_b20033 at 44.280 kb on + strand, within SM_b20033 at 44.541 kb on + strand at 44.541 kb on + strand at 44.542 kb on - strand at 44.542 kb on - strand at 44.856 kb on - strand, within SM_b20034 at 45.016 kb on - strand, within SM_b20034 at 45.016 kb on - strand, within SM_b20034 at 45.022 kb on + strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.023 kb on - strand, within SM_b20034 at 45.315 kb on + strand at 45.315 kb on + strand at 45.407 kb on + strand at 45.408 kb on - strand at 45.408 kb on - strand at 45.518 kb on - strand, within SM_b20035 at 45.756 kb on + strand, within SM_b20035 at 45.756 kb on + strand, within SM_b20035 at 45.757 kb on - strand, within SM_b20035 at 45.831 kb on + strand, within SM_b20035 at 45.832 kb on - strand, within SM_b20035 at 45.832 kb on - strand, within SM_b20035 at 45.906 kb on + strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.047 kb on - strand, within SM_b20035 at 46.255 kb on + strand, within SM_b20035
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 43,777 - -1.4 43,777 - +0.9 43,813 - +0.8 43,813 - +0.2 44,068 + SM_b20033 0.44 -0.0 44,068 + SM_b20033 0.44 -0.7 44,250 + SM_b20033 0.72 -0.6 44,277 + SM_b20033 0.76 -2.1 44,277 + SM_b20033 0.76 +0.3 44,280 + SM_b20033 0.76 -0.6 44,541 + -1.9 44,541 + -0.0 44,542 - -1.5 44,542 - +0.0 44,856 - SM_b20034 0.22 -0.9 45,016 - SM_b20034 0.50 -0.8 45,016 - SM_b20034 0.50 -0.4 45,022 + SM_b20034 0.51 -1.6 45,023 - SM_b20034 0.51 +1.4 45,023 - SM_b20034 0.51 -0.2 45,023 - SM_b20034 0.51 -0.2 45,315 + -0.0 45,315 + -0.7 45,407 + +0.8 45,408 - +0.3 45,408 - -0.5 45,518 - SM_b20035 0.16 +0.2 45,756 + SM_b20035 0.35 +0.2 45,756 + SM_b20035 0.35 +0.8 45,757 - SM_b20035 0.35 +1.6 45,831 + SM_b20035 0.41 +0.1 45,832 - SM_b20035 0.41 +1.2 45,832 - SM_b20035 0.41 -0.0 45,906 + SM_b20035 0.47 +0.7 46,047 - SM_b20035 0.58 -0.3 46,047 - SM_b20035 0.58 -2.4 46,047 - SM_b20035 0.58 +0.4 46,255 + SM_b20035 0.74 +0.1
Or see this region's nucleotide sequence