Experiment: Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20029 and SM_b20030 overlap by 1 nucleotides SM_b20030 and SM_b20031 are separated by 25 nucleotides SM_b20031 and SM_b20032 are separated by 96 nucleotides
SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423
_b20029
SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280
_b20030
SM_b20031: SM_b20031 - hypothetical protein, at 42,306 to 42,554
_b20031
SM_b20032: SM_b20032 - hypothetical protein, at 42,651 to 43,385
_b20032
Position (kb) 42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.330 kb on + strand, within SM_b20029 at 41.531 kb on - strand, within SM_b20030 at 41.614 kb on - strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 42.239 kb on + strand at 42.239 kb on + strand at 42.307 kb on + strand at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.500 kb on - strand, within SM_b20031 at 42.500 kb on - strand, within SM_b20031 at 42.583 kb on + strand at 42.583 kb on + strand at 42.584 kb on - strand at 42.776 kb on - strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.826 kb on - strand, within SM_b20032 at 43.053 kb on - strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.358 kb on - strand at 43.358 kb on - strand at 43.358 kb on - strand at 43.537 kb on + strand at 43.537 kb on + strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.004 mg/ml remove 41,330 + SM_b20029 0.80 -2.2 41,531 - SM_b20030 0.13 -1.0 41,614 - SM_b20030 0.22 -0.9 41,666 + SM_b20030 0.28 -0.1 41,666 + SM_b20030 0.28 -2.4 41,666 + SM_b20030 0.28 -0.4 41,666 + SM_b20030 0.28 +0.1 41,667 - SM_b20030 0.28 -1.0 41,667 - SM_b20030 0.28 -0.0 42,239 + +0.5 42,239 + +0.6 42,307 + +0.3 42,372 - SM_b20031 0.27 -0.5 42,372 - SM_b20031 0.27 -1.1 42,372 - SM_b20031 0.27 +2.8 42,372 - SM_b20031 0.27 -0.2 42,500 - SM_b20031 0.78 -1.5 42,500 - SM_b20031 0.78 -2.4 42,583 + +0.2 42,583 + -0.6 42,584 - -1.0 42,776 - SM_b20032 0.17 -0.2 42,825 + SM_b20032 0.24 -0.1 42,825 + SM_b20032 0.24 -0.7 42,826 - SM_b20032 0.24 +0.9 43,053 - SM_b20032 0.55 +1.0 43,275 + SM_b20032 0.85 +0.4 43,275 + SM_b20032 0.85 +0.4 43,275 + SM_b20032 0.85 +0.2 43,276 - SM_b20032 0.85 -0.2 43,276 - SM_b20032 0.85 +0.5 43,276 - SM_b20032 0.85 +0.4 43,358 - +1.1 43,358 - +0.2 43,358 - -0.1 43,537 + +0.8 43,537 + +0.2 43,538 - -2.9 43,538 - +0.6 43,538 - -2.3
Or see this region's nucleotide sequence