Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5828 and Pf1N1B4_5829 are separated by 124 nucleotides Pf1N1B4_5829 and Pf1N1B4_5830 are separated by 3 nucleotides Pf1N1B4_5830 and Pf1N1B4_5831 are separated by 354 nucleotides
Pf1N1B4_5828 - Mobile element protein, at 262,198 to 263,499
_5828
Pf1N1B4_5829 - FIG005107: hypothetical protein, at 263,624 to 264,382
_5829
Pf1N1B4_5830 - FIG023677: hypothetical protein, at 264,386 to 265,153
_5830
Pf1N1B4_5831 - SAM-dependent methyltransferases, at 265,508 to 266,557
_5831
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.507 kb on + strand at 263.511 kb on + strand at 263.515 kb on + strand at 263.515 kb on + strand at 263.920 kb on - strand, within Pf1N1B4_5829 at 264.037 kb on - strand, within Pf1N1B4_5829 at 264.498 kb on + strand, within Pf1N1B4_5830 at 264.499 kb on - strand, within Pf1N1B4_5830 at 264.672 kb on + strand, within Pf1N1B4_5830 at 264.771 kb on + strand, within Pf1N1B4_5830 at 264.883 kb on - strand, within Pf1N1B4_5830 at 264.906 kb on + strand at 264.924 kb on + strand, within Pf1N1B4_5830 at 264.925 kb on - strand, within Pf1N1B4_5830 at 265.359 kb on - strand at 265.359 kb on - strand at 265.378 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.384 kb on - strand at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.802 kb on + strand, within Pf1N1B4_5831 at 265.950 kb on - strand, within Pf1N1B4_5831 at 266.108 kb on + strand, within Pf1N1B4_5831
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 263,507 + -1.4 263,511 + -0.9 263,515 + -1.1 263,515 + -0.3 263,920 - Pf1N1B4_5829 0.39 -0.1 264,037 - Pf1N1B4_5829 0.54 -0.6 264,498 + Pf1N1B4_5830 0.15 -1.8 264,499 - Pf1N1B4_5830 0.15 -0.5 264,672 + Pf1N1B4_5830 0.37 +1.8 264,771 + Pf1N1B4_5830 0.50 -2.1 264,883 - Pf1N1B4_5830 0.65 -1.3 264,906 + -0.1 264,924 + Pf1N1B4_5830 0.70 -0.6 264,925 - Pf1N1B4_5830 0.70 -1.3 265,359 - -0.1 265,359 - +0.0 265,378 - +0.7 265,384 - -1.1 265,384 - -0.1 265,384 - -1.5 265,802 + Pf1N1B4_5831 0.28 +0.1 265,802 + Pf1N1B4_5831 0.28 +0.9 265,950 - Pf1N1B4_5831 0.42 -0.2 266,108 + Pf1N1B4_5831 0.57 +1.9
Or see this region's nucleotide sequence