Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_574

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_573 and Pf1N1B4_574 are separated by 383 nucleotidesPf1N1B4_574 and Pf1N1B4_575 overlap by 4 nucleotides Pf1N1B4_573 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 666,949 to 667,629 _573 Pf1N1B4_574 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,013 to 668,186 _574 Pf1N1B4_575 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 668,183 to 669,700 _575 Position (kb) 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 667.094 kb on + strand, within Pf1N1B4_573at 667.094 kb on + strand, within Pf1N1B4_573at 667.094 kb on + strand, within Pf1N1B4_573at 667.094 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strandat 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strandat 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.118 kb on + strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strandat 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.119 kb on - strand, within Pf1N1B4_573at 667.304 kb on + strand, within Pf1N1B4_573at 667.304 kb on + strand, within Pf1N1B4_573at 667.304 kb on + strand, within Pf1N1B4_573at 667.304 kb on + strand, within Pf1N1B4_573at 667.304 kb on + strand, within Pf1N1B4_573at 667.305 kb on - strand, within Pf1N1B4_573at 667.305 kb on - strand, within Pf1N1B4_573at 667.305 kb on - strandat 667.317 kb on + strand, within Pf1N1B4_573at 667.318 kb on - strand, within Pf1N1B4_573at 667.422 kb on + strand, within Pf1N1B4_573at 667.422 kb on + strand, within Pf1N1B4_573at 667.422 kb on + strand, within Pf1N1B4_573at 667.423 kb on - strand, within Pf1N1B4_573at 667.436 kb on + strand, within Pf1N1B4_573at 667.436 kb on + strand, within Pf1N1B4_573at 667.436 kb on + strand, within Pf1N1B4_573at 667.436 kb on + strand, within Pf1N1B4_573at 667.436 kb on + strand, within Pf1N1B4_573at 667.436 kb on + strand, within Pf1N1B4_573at 667.436 kb on + strand, within Pf1N1B4_573at 667.437 kb on - strand, within Pf1N1B4_573at 667.437 kb on - strand, within Pf1N1B4_573at 667.463 kb on + strand, within Pf1N1B4_573at 667.463 kb on + strand, within Pf1N1B4_573at 667.463 kb on + strand, within Pf1N1B4_573at 667.464 kb on - strand, within Pf1N1B4_573at 667.475 kb on + strand, within Pf1N1B4_573at 667.475 kb on + strand, within Pf1N1B4_573at 667.475 kb on + strandat 667.475 kb on + strand, within Pf1N1B4_573at 667.475 kb on + strand, within Pf1N1B4_573at 667.475 kb on + strand, within Pf1N1B4_573at 667.475 kb on + strand, within Pf1N1B4_573at 667.475 kb on + strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strandat 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.476 kb on - strand, within Pf1N1B4_573at 667.554 kb on + strandat 667.554 kb on + strand, within Pf1N1B4_573at 667.555 kb on - strand, within Pf1N1B4_573at 667.562 kb on + strandat 667.601 kb on + strandat 667.601 kb on + strandat 667.602 kb on - strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.605 kb on + strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.606 kb on - strandat 667.608 kb on - strandat 667.662 kb on + strandat 667.662 kb on + strandat 667.662 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.680 kb on + strandat 667.681 kb on - strandat 667.681 kb on - strandat 667.683 kb on + strandat 667.683 kb on + strandat 667.683 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.715 kb on + strandat 667.716 kb on - strandat 667.720 kb on + strandat 667.720 kb on + strandat 667.720 kb on + strandat 667.720 kb on + strandat 667.720 kb on + strandat 667.720 kb on + strandat 667.720 kb on + strandat 667.720 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.751 kb on + strandat 667.774 kb on + strandat 667.793 kb on + strandat 667.793 kb on + strandat 667.795 kb on + strandat 667.795 kb on + strandat 667.795 kb on + strandat 667.795 kb on + strandat 667.796 kb on - strandat 667.796 kb on - strandat 667.825 kb on + strandat 667.826 kb on - strandat 667.849 kb on + strandat 667.849 kb on + strandat 667.849 kb on + strandat 667.891 kb on + strandat 667.891 kb on + strandat 667.891 kb on + strandat 667.957 kb on + strandat 667.957 kb on + strandat 667.957 kb on + strandat 667.958 kb on - strandat 668.105 kb on - strand, within Pf1N1B4_574at 668.128 kb on + strand, within Pf1N1B4_574at 668.128 kb on + strand, within Pf1N1B4_574at 668.809 kb on + strand, within Pf1N1B4_575at 668.809 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strandat 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.889 kb on + strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strand, within Pf1N1B4_575at 668.890 kb on - strandat 668.890 kb on - strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.893 kb on + strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strandat 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.894 kb on - strand, within Pf1N1B4_575at 668.899 kb on - strand, within Pf1N1B4_575at 668.899 kb on - strand, within Pf1N1B4_575at 668.899 kb on - strand, within Pf1N1B4_575at 669.060 kb on + strand, within Pf1N1B4_575at 669.149 kb on - strand, within Pf1N1B4_575at 669.149 kb on - strand, within Pf1N1B4_575at 669.149 kb on - strand, within Pf1N1B4_575at 669.166 kb on - strand, within Pf1N1B4_575at 669.166 kb on - strand, within Pf1N1B4_575

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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667,094 + Pf1N1B4_573 0.21 +0.3
667,094 + Pf1N1B4_573 0.21 -0.6
667,094 + Pf1N1B4_573 0.21 +0.9
667,094 + Pf1N1B4_573 0.21 +0.3
667,118 + Pf1N1B4_573 0.25 +0.1
667,118 + -0.1
667,118 + Pf1N1B4_573 0.25 +0.1
667,118 + Pf1N1B4_573 0.25 -0.7
667,118 + Pf1N1B4_573 0.25 -2.0
667,118 + Pf1N1B4_573 0.25 -1.0
667,118 + Pf1N1B4_573 0.25 -0.7
667,118 + -1.1
667,118 + Pf1N1B4_573 0.25 -1.0
667,118 + Pf1N1B4_573 0.25 -0.9
667,118 + Pf1N1B4_573 0.25 -1.4
667,118 + Pf1N1B4_573 0.25 -1.9
667,118 + Pf1N1B4_573 0.25 +0.3
667,119 - Pf1N1B4_573 0.25 +1.3
667,119 - Pf1N1B4_573 0.25 +0.0
667,119 - Pf1N1B4_573 0.25 -0.7
667,119 - -0.1
667,119 - Pf1N1B4_573 0.25 -0.2
667,119 - Pf1N1B4_573 0.25 +1.5
667,119 - Pf1N1B4_573 0.25 -0.7
667,119 - Pf1N1B4_573 0.25 -0.5
667,119 - Pf1N1B4_573 0.25 +0.3
667,119 - Pf1N1B4_573 0.25 +1.1
667,119 - Pf1N1B4_573 0.25 +1.5
667,119 - Pf1N1B4_573 0.25 -0.1
667,304 + Pf1N1B4_573 0.52 -0.7
667,304 + Pf1N1B4_573 0.52 +1.2
667,304 + Pf1N1B4_573 0.52 +0.1
667,304 + Pf1N1B4_573 0.52 +0.5
667,304 + Pf1N1B4_573 0.52 -0.3
667,305 - Pf1N1B4_573 0.52 -1.4
667,305 - Pf1N1B4_573 0.52 +0.2
667,305 - -0.7
667,317 + Pf1N1B4_573 0.54 +0.1
667,318 - Pf1N1B4_573 0.54 +0.4
667,422 + Pf1N1B4_573 0.69 -1.1
667,422 + Pf1N1B4_573 0.69 +1.9
667,422 + Pf1N1B4_573 0.69 +0.3
667,423 - Pf1N1B4_573 0.70 -0.7
667,436 + Pf1N1B4_573 0.72 -0.4
667,436 + Pf1N1B4_573 0.72 +0.9
667,436 + Pf1N1B4_573 0.72 +0.3
667,436 + Pf1N1B4_573 0.72 -1.1
667,436 + Pf1N1B4_573 0.72 +0.9
667,436 + Pf1N1B4_573 0.72 +0.9
667,436 + Pf1N1B4_573 0.72 +0.6
667,437 - Pf1N1B4_573 0.72 -0.5
667,437 - Pf1N1B4_573 0.72 -2.1
667,463 + Pf1N1B4_573 0.75 -0.0
667,463 + Pf1N1B4_573 0.75 -2.1
667,463 + Pf1N1B4_573 0.75 -0.6
667,464 - Pf1N1B4_573 0.76 -1.2
667,475 + Pf1N1B4_573 0.77 -1.1
667,475 + Pf1N1B4_573 0.77 -0.9
667,475 + +1.7
667,475 + Pf1N1B4_573 0.77 +0.9
667,475 + Pf1N1B4_573 0.77 -0.8
667,475 + Pf1N1B4_573 0.77 +1.0
667,475 + Pf1N1B4_573 0.77 -0.3
667,475 + Pf1N1B4_573 0.77 -1.4
667,476 - Pf1N1B4_573 0.77 +0.9
667,476 - +0.5
667,476 - Pf1N1B4_573 0.77 +0.1
667,476 - Pf1N1B4_573 0.77 -1.9
667,476 - Pf1N1B4_573 0.77 -1.1
667,476 - Pf1N1B4_573 0.77 +1.1
667,476 - Pf1N1B4_573 0.77 -0.9
667,476 - Pf1N1B4_573 0.77 +0.5
667,476 - Pf1N1B4_573 0.77 +0.2
667,476 - Pf1N1B4_573 0.77 +0.9
667,554 + +0.9
667,554 + Pf1N1B4_573 0.89 +0.9
667,555 - Pf1N1B4_573 0.89 +1.3
667,562 + +0.9
667,601 + -0.8
667,601 + -0.1
667,602 - -0.4
667,605 + -0.1
667,605 + -1.0
667,605 + +1.3
667,605 + -0.7
667,605 + +0.0
667,605 + +0.2
667,605 + -0.3
667,605 + -2.3
667,605 + +0.5
667,605 + +0.4
667,605 + -0.9
667,605 + +0.5
667,605 + +0.3
667,605 + -0.8
667,605 + +0.1
667,606 - -1.4
667,606 - -0.3
667,606 - +0.2
667,606 - +1.9
667,606 - +0.6
667,606 - -0.7
667,606 - +0.0
667,606 - +0.4
667,606 - -0.1
667,608 - -0.4
667,662 + +0.7
667,662 + -0.5
667,662 + -0.7
667,680 + -2.3
667,680 + -1.4
667,680 + -0.5
667,680 + -0.7
667,680 + +0.6
667,680 + -0.3
667,680 + +0.1
667,680 + -1.8
667,680 + +0.6
667,680 + -2.3
667,680 + +1.9
667,681 - +1.3
667,681 - -0.5
667,683 + -0.9
667,683 + -1.1
667,683 + +0.2
667,715 + -0.6
667,715 + +1.5
667,715 + +0.9
667,715 + -0.4
667,715 + +0.4
667,715 + +0.2
667,715 + +0.3
667,715 + -0.1
667,715 + -1.0
667,715 + +0.1
667,715 + -1.9
667,715 + +0.6
667,715 + +0.2
667,715 + -0.3
667,715 + +0.2
667,715 + -2.8
667,716 - -0.4
667,720 + -1.1
667,720 + -0.1
667,720 + +1.5
667,720 + -0.9
667,720 + +2.5
667,720 + -1.2
667,720 + +0.9
667,720 + +0.2
667,751 + -0.1
667,751 + -2.4
667,751 + +0.3
667,751 + -0.6
667,751 + -1.4
667,751 + -0.1
667,751 + +0.5
667,751 + -0.7
667,751 + +0.2
667,774 + +0.4
667,793 + +0.1
667,793 + -0.1
667,795 + -0.7
667,795 + +0.7
667,795 + +0.5
667,795 + -1.4
667,796 - -1.1
667,796 - +1.5
667,825 + -1.4
667,826 - +1.1
667,849 + -0.7
667,849 + +0.2
667,849 + +1.2
667,891 + +0.3
667,891 + -0.9
667,891 + -0.1
667,957 + -1.7
667,957 + -1.0
667,957 + -0.2
667,958 - -1.1
668,105 - Pf1N1B4_574 0.53 -0.7
668,128 + Pf1N1B4_574 0.66 +0.3
668,128 + Pf1N1B4_574 0.66 -1.8
668,809 + Pf1N1B4_575 0.41 +0.8
668,809 + Pf1N1B4_575 0.41 +0.5
668,889 + +0.3
668,889 + Pf1N1B4_575 0.47 -1.1
668,889 + Pf1N1B4_575 0.47 +0.7
668,889 + Pf1N1B4_575 0.47 +0.3
668,889 + Pf1N1B4_575 0.47 +2.5
668,889 + Pf1N1B4_575 0.47 -0.7
668,889 + Pf1N1B4_575 0.47 +0.9
668,889 + Pf1N1B4_575 0.47 -0.1
668,889 + Pf1N1B4_575 0.47 +0.2
668,889 + Pf1N1B4_575 0.47 -1.9
668,889 + Pf1N1B4_575 0.47 +0.9
668,889 + Pf1N1B4_575 0.47 +1.5
668,889 + Pf1N1B4_575 0.47 -0.1
668,889 + Pf1N1B4_575 0.47 -1.4
668,889 + Pf1N1B4_575 0.47 +3.2
668,890 - Pf1N1B4_575 0.47 +0.4
668,890 - Pf1N1B4_575 0.47 -0.1
668,890 - Pf1N1B4_575 0.47 +0.9
668,890 - Pf1N1B4_575 0.47 -1.9
668,890 - Pf1N1B4_575 0.47 -0.4
668,890 - -0.7
668,890 - Pf1N1B4_575 0.47 -0.1
668,893 + Pf1N1B4_575 0.47 -2.1
668,893 + Pf1N1B4_575 0.47 -0.1
668,893 + Pf1N1B4_575 0.47 -0.7
668,893 + Pf1N1B4_575 0.47 -0.4
668,893 + Pf1N1B4_575 0.47 -0.3
668,894 - Pf1N1B4_575 0.47 +0.9
668,894 - Pf1N1B4_575 0.47 -0.7
668,894 - Pf1N1B4_575 0.47 -0.9
668,894 - +0.9
668,894 - Pf1N1B4_575 0.47 -1.9
668,894 - Pf1N1B4_575 0.47 +0.1
668,894 - Pf1N1B4_575 0.47 -0.7
668,894 - Pf1N1B4_575 0.47 -1.1
668,894 - Pf1N1B4_575 0.47 +0.4
668,894 - Pf1N1B4_575 0.47 -0.3
668,894 - Pf1N1B4_575 0.47 +1.4
668,894 - Pf1N1B4_575 0.47 -0.9
668,894 - Pf1N1B4_575 0.47 +1.2
668,899 - Pf1N1B4_575 0.47 -0.3
668,899 - Pf1N1B4_575 0.47 +0.9
668,899 - Pf1N1B4_575 0.47 +0.5
669,060 + Pf1N1B4_575 0.58 -0.6
669,149 - Pf1N1B4_575 0.64 +0.7
669,149 - Pf1N1B4_575 0.64 -1.1
669,149 - Pf1N1B4_575 0.64 -0.2
669,166 - Pf1N1B4_575 0.65 -0.7
669,166 - Pf1N1B4_575 0.65 -1.0

Or see this region's nucleotide sequence