Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4835 and Pf1N1B4_4836 are separated by 15 nucleotides Pf1N1B4_4836 and Pf1N1B4_4837 are separated by 27 nucleotides
Pf1N1B4_4835 - Carbon starvation protein A, at 5,340,087 to 5,342,144
_4835
Pf1N1B4_4836 - COG2879, Hypothetical small protein yjiX, at 5,342,160 to 5,342,357
_4836
Pf1N1B4_4837 - hypothetical protein, at 5,342,385 to 5,342,555
_4837
Position (kb)
5342
5343 Strain fitness (log2 ratio)
-2
-1
0
1 at 5341.920 kb on + strand, within Pf1N1B4_4835 at 5341.993 kb on - strand at 5341.993 kb on - strand at 5341.993 kb on - strand at 5342.001 kb on + strand at 5342.066 kb on + strand at 5342.066 kb on + strand at 5342.066 kb on + strand at 5342.066 kb on + strand at 5342.103 kb on - strand at 5342.191 kb on - strand at 5342.242 kb on - strand, within Pf1N1B4_4836 at 5342.242 kb on - strand, within Pf1N1B4_4836 at 5342.242 kb on - strand, within Pf1N1B4_4836 at 5342.252 kb on + strand, within Pf1N1B4_4836 at 5342.252 kb on + strand, within Pf1N1B4_4836 at 5342.253 kb on - strand, within Pf1N1B4_4836 at 5342.253 kb on - strand, within Pf1N1B4_4836 at 5342.369 kb on + strand at 5342.461 kb on - strand, within Pf1N1B4_4837 at 5342.461 kb on - strand, within Pf1N1B4_4837 at 5342.461 kb on - strand, within Pf1N1B4_4837 at 5342.536 kb on + strand, within Pf1N1B4_4837 at 5342.537 kb on - strand, within Pf1N1B4_4837 at 5342.537 kb on - strand, within Pf1N1B4_4837 at 5342.537 kb on - strand, within Pf1N1B4_4837 at 5342.611 kb on - strand at 5342.716 kb on - strand at 5342.716 kb on - strand at 5342.748 kb on - strand at 5342.789 kb on - strand at 5343.022 kb on - strand at 5343.022 kb on - strand at 5343.023 kb on + strand at 5343.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 5,341,920 + Pf1N1B4_4835 0.89 -0.2 5,341,993 - -1.2 5,341,993 - -0.6 5,341,993 - +0.4 5,342,001 + -1.4 5,342,066 + -0.6 5,342,066 + -0.6 5,342,066 + -0.0 5,342,066 + -0.5 5,342,103 - -1.2 5,342,191 - +0.8 5,342,242 - Pf1N1B4_4836 0.41 -1.2 5,342,242 - Pf1N1B4_4836 0.41 -1.6 5,342,242 - Pf1N1B4_4836 0.41 +0.3 5,342,252 + Pf1N1B4_4836 0.46 +0.9 5,342,252 + Pf1N1B4_4836 0.46 -0.9 5,342,253 - Pf1N1B4_4836 0.47 +0.6 5,342,253 - Pf1N1B4_4836 0.47 -0.2 5,342,369 + +0.4 5,342,461 - Pf1N1B4_4837 0.44 -0.6 5,342,461 - Pf1N1B4_4837 0.44 -0.2 5,342,461 - Pf1N1B4_4837 0.44 -0.2 5,342,536 + Pf1N1B4_4837 0.88 -1.9 5,342,537 - Pf1N1B4_4837 0.89 -0.6 5,342,537 - Pf1N1B4_4837 0.89 -1.4 5,342,537 - Pf1N1B4_4837 0.89 -0.2 5,342,611 - -1.4 5,342,716 - -1.4 5,342,716 - +1.0 5,342,748 - +0.2 5,342,789 - -0.4 5,343,022 - +1.4 5,343,022 - -1.2 5,343,023 + -0.6 5,343,335 + +0.8
Or see this region's nucleotide sequence