Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4837

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4835 and Pf1N1B4_4836 are separated by 15 nucleotidesPf1N1B4_4836 and Pf1N1B4_4837 are separated by 27 nucleotides Pf1N1B4_4835 - Carbon starvation protein A, at 5,340,087 to 5,342,144 _4835 Pf1N1B4_4836 - COG2879, Hypothetical small protein yjiX, at 5,342,160 to 5,342,357 _4836 Pf1N1B4_4837 - hypothetical protein, at 5,342,385 to 5,342,555 _4837 Position (kb) 5342 5343Strain fitness (log2 ratio) -2 -1 0 1at 5341.920 kb on + strand, within Pf1N1B4_4835at 5341.993 kb on - strandat 5341.993 kb on - strandat 5341.993 kb on - strandat 5342.001 kb on + strandat 5342.066 kb on + strandat 5342.066 kb on + strandat 5342.066 kb on + strandat 5342.066 kb on + strandat 5342.103 kb on - strandat 5342.191 kb on - strandat 5342.242 kb on - strand, within Pf1N1B4_4836at 5342.242 kb on - strand, within Pf1N1B4_4836at 5342.242 kb on - strand, within Pf1N1B4_4836at 5342.252 kb on + strand, within Pf1N1B4_4836at 5342.252 kb on + strand, within Pf1N1B4_4836at 5342.253 kb on - strand, within Pf1N1B4_4836at 5342.253 kb on - strand, within Pf1N1B4_4836at 5342.369 kb on + strandat 5342.461 kb on - strand, within Pf1N1B4_4837at 5342.461 kb on - strand, within Pf1N1B4_4837at 5342.461 kb on - strand, within Pf1N1B4_4837at 5342.536 kb on + strand, within Pf1N1B4_4837at 5342.537 kb on - strand, within Pf1N1B4_4837at 5342.537 kb on - strand, within Pf1N1B4_4837at 5342.537 kb on - strand, within Pf1N1B4_4837at 5342.611 kb on - strandat 5342.716 kb on - strandat 5342.716 kb on - strandat 5342.748 kb on - strandat 5342.789 kb on - strandat 5343.022 kb on - strandat 5343.022 kb on - strandat 5343.023 kb on + strandat 5343.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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5,341,920 + Pf1N1B4_4835 0.89 -0.2
5,341,993 - -1.2
5,341,993 - -0.6
5,341,993 - +0.4
5,342,001 + -1.4
5,342,066 + -0.6
5,342,066 + -0.6
5,342,066 + -0.0
5,342,066 + -0.5
5,342,103 - -1.2
5,342,191 - +0.8
5,342,242 - Pf1N1B4_4836 0.41 -1.2
5,342,242 - Pf1N1B4_4836 0.41 -1.6
5,342,242 - Pf1N1B4_4836 0.41 +0.3
5,342,252 + Pf1N1B4_4836 0.46 +0.9
5,342,252 + Pf1N1B4_4836 0.46 -0.9
5,342,253 - Pf1N1B4_4836 0.47 +0.6
5,342,253 - Pf1N1B4_4836 0.47 -0.2
5,342,369 + +0.4
5,342,461 - Pf1N1B4_4837 0.44 -0.6
5,342,461 - Pf1N1B4_4837 0.44 -0.2
5,342,461 - Pf1N1B4_4837 0.44 -0.2
5,342,536 + Pf1N1B4_4837 0.88 -1.9
5,342,537 - Pf1N1B4_4837 0.89 -0.6
5,342,537 - Pf1N1B4_4837 0.89 -1.4
5,342,537 - Pf1N1B4_4837 0.89 -0.2
5,342,611 - -1.4
5,342,716 - -1.4
5,342,716 - +1.0
5,342,748 - +0.2
5,342,789 - -0.4
5,343,022 - +1.4
5,343,022 - -1.2
5,343,023 + -0.6
5,343,335 + +0.8

Or see this region's nucleotide sequence