Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4694 and Pf1N1B4_4695 overlap by 12 nucleotides Pf1N1B4_4695 and Pf1N1B4_4696 overlap by 4 nucleotides
Pf1N1B4_4694 - Transcriptional regulator, LysR family, at 5,185,795 to 5,186,721
_4694
Pf1N1B4_4695 - hypothetical protein, at 5,186,710 to 5,187,672
_4695
Pf1N1B4_4696 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 5,187,669 to 5,188,961
_4696
Position (kb)
5186
5187
5188 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5185.987 kb on + strand at 5186.368 kb on + strand, within Pf1N1B4_4694 at 5186.500 kb on + strand, within Pf1N1B4_4694 at 5186.521 kb on + strand at 5186.612 kb on - strand at 5186.782 kb on + strand at 5186.782 kb on + strand at 5186.783 kb on - strand at 5186.783 kb on - strand at 5186.990 kb on - strand, within Pf1N1B4_4695 at 5186.990 kb on - strand, within Pf1N1B4_4695 at 5187.254 kb on + strand, within Pf1N1B4_4695 at 5187.312 kb on - strand, within Pf1N1B4_4695 at 5187.376 kb on + strand, within Pf1N1B4_4695 at 5187.376 kb on + strand, within Pf1N1B4_4695 at 5187.402 kb on + strand, within Pf1N1B4_4695 at 5187.700 kb on + strand at 5187.700 kb on + strand at 5187.701 kb on - strand at 5187.826 kb on + strand, within Pf1N1B4_4696 at 5187.987 kb on + strand, within Pf1N1B4_4696 at 5188.064 kb on + strand, within Pf1N1B4_4696 at 5188.162 kb on - strand, within Pf1N1B4_4696 at 5188.162 kb on - strand, within Pf1N1B4_4696 at 5188.162 kb on - strand, within Pf1N1B4_4696 at 5188.341 kb on + strand, within Pf1N1B4_4696 at 5188.342 kb on - strand, within Pf1N1B4_4696 at 5188.455 kb on + strand, within Pf1N1B4_4696 at 5188.455 kb on + strand, within Pf1N1B4_4696 at 5188.456 kb on - strand, within Pf1N1B4_4696
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 5,185,987 + +0.4 5,186,368 + Pf1N1B4_4694 0.62 -0.0 5,186,500 + Pf1N1B4_4694 0.76 -0.4 5,186,521 + +0.4 5,186,612 - -1.4 5,186,782 + -0.9 5,186,782 + -1.4 5,186,783 - -0.5 5,186,783 - +1.0 5,186,990 - Pf1N1B4_4695 0.29 -2.2 5,186,990 - Pf1N1B4_4695 0.29 -0.0 5,187,254 + Pf1N1B4_4695 0.56 -1.6 5,187,312 - Pf1N1B4_4695 0.63 -1.8 5,187,376 + Pf1N1B4_4695 0.69 -0.1 5,187,376 + Pf1N1B4_4695 0.69 -2.5 5,187,402 + Pf1N1B4_4695 0.72 +0.2 5,187,700 + -0.6 5,187,700 + -1.6 5,187,701 - +0.4 5,187,826 + Pf1N1B4_4696 0.12 +0.2 5,187,987 + Pf1N1B4_4696 0.25 -0.7 5,188,064 + Pf1N1B4_4696 0.31 -0.3 5,188,162 - Pf1N1B4_4696 0.38 -1.3 5,188,162 - Pf1N1B4_4696 0.38 -1.9 5,188,162 - Pf1N1B4_4696 0.38 -0.3 5,188,341 + Pf1N1B4_4696 0.52 +0.1 5,188,342 - Pf1N1B4_4696 0.52 +0.4 5,188,455 + Pf1N1B4_4696 0.61 +2.0 5,188,455 + Pf1N1B4_4696 0.61 +0.6 5,188,456 - Pf1N1B4_4696 0.61 -0.2
Or see this region's nucleotide sequence