Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4695

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4694 and Pf1N1B4_4695 overlap by 12 nucleotidesPf1N1B4_4695 and Pf1N1B4_4696 overlap by 4 nucleotides Pf1N1B4_4694 - Transcriptional regulator, LysR family, at 5,185,795 to 5,186,721 _4694 Pf1N1B4_4695 - hypothetical protein, at 5,186,710 to 5,187,672 _4695 Pf1N1B4_4696 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 5,187,669 to 5,188,961 _4696 Position (kb) 5186 5187 5188Strain fitness (log2 ratio) -2 -1 0 1 2at 5185.987 kb on + strandat 5186.368 kb on + strand, within Pf1N1B4_4694at 5186.500 kb on + strand, within Pf1N1B4_4694at 5186.521 kb on + strandat 5186.612 kb on - strandat 5186.782 kb on + strandat 5186.782 kb on + strandat 5186.783 kb on - strandat 5186.783 kb on - strandat 5186.990 kb on - strand, within Pf1N1B4_4695at 5186.990 kb on - strand, within Pf1N1B4_4695at 5187.254 kb on + strand, within Pf1N1B4_4695at 5187.312 kb on - strand, within Pf1N1B4_4695at 5187.376 kb on + strand, within Pf1N1B4_4695at 5187.376 kb on + strand, within Pf1N1B4_4695at 5187.402 kb on + strand, within Pf1N1B4_4695at 5187.700 kb on + strandat 5187.700 kb on + strandat 5187.701 kb on - strandat 5187.826 kb on + strand, within Pf1N1B4_4696at 5187.987 kb on + strand, within Pf1N1B4_4696at 5188.064 kb on + strand, within Pf1N1B4_4696at 5188.162 kb on - strand, within Pf1N1B4_4696at 5188.162 kb on - strand, within Pf1N1B4_4696at 5188.162 kb on - strand, within Pf1N1B4_4696at 5188.341 kb on + strand, within Pf1N1B4_4696at 5188.342 kb on - strand, within Pf1N1B4_4696at 5188.455 kb on + strand, within Pf1N1B4_4696at 5188.455 kb on + strand, within Pf1N1B4_4696at 5188.456 kb on - strand, within Pf1N1B4_4696

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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5,185,987 + +0.4
5,186,368 + Pf1N1B4_4694 0.62 -0.0
5,186,500 + Pf1N1B4_4694 0.76 -0.4
5,186,521 + +0.4
5,186,612 - -1.4
5,186,782 + -0.9
5,186,782 + -1.4
5,186,783 - -0.5
5,186,783 - +1.0
5,186,990 - Pf1N1B4_4695 0.29 -2.2
5,186,990 - Pf1N1B4_4695 0.29 -0.0
5,187,254 + Pf1N1B4_4695 0.56 -1.6
5,187,312 - Pf1N1B4_4695 0.63 -1.8
5,187,376 + Pf1N1B4_4695 0.69 -0.1
5,187,376 + Pf1N1B4_4695 0.69 -2.5
5,187,402 + Pf1N1B4_4695 0.72 +0.2
5,187,700 + -0.6
5,187,700 + -1.6
5,187,701 - +0.4
5,187,826 + Pf1N1B4_4696 0.12 +0.2
5,187,987 + Pf1N1B4_4696 0.25 -0.7
5,188,064 + Pf1N1B4_4696 0.31 -0.3
5,188,162 - Pf1N1B4_4696 0.38 -1.3
5,188,162 - Pf1N1B4_4696 0.38 -1.9
5,188,162 - Pf1N1B4_4696 0.38 -0.3
5,188,341 + Pf1N1B4_4696 0.52 +0.1
5,188,342 - Pf1N1B4_4696 0.52 +0.4
5,188,455 + Pf1N1B4_4696 0.61 +2.0
5,188,455 + Pf1N1B4_4696 0.61 +0.6
5,188,456 - Pf1N1B4_4696 0.61 -0.2

Or see this region's nucleotide sequence