Experiment: Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_303 and Pf1N1B4_304 are separated by 234 nucleotides Pf1N1B4_304 and Pf1N1B4_305 are separated by 207 nucleotides
Pf1N1B4_303 - Transglycosylase, Slt family, at 356,094 to 357,515
_303
Pf1N1B4_304 - Deoxyribonuclease TatD, at 357,750 to 358,559
_304
Pf1N1B4_305 - Methyl-accepting chemotaxis protein, at 358,767 to 360,248
_305
Position (kb) 357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 356.773 kb on + strand, within Pf1N1B4_303 at 356.773 kb on + strand, within Pf1N1B4_303 at 357.061 kb on + strand, within Pf1N1B4_303 at 357.125 kb on + strand at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.156 kb on + strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.157 kb on - strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.277 kb on + strand, within Pf1N1B4_303 at 357.278 kb on - strand at 357.304 kb on + strand, within Pf1N1B4_303 at 357.598 kb on + strand at 357.671 kb on + strand at 357.681 kb on + strand at 357.681 kb on + strand at 357.681 kb on + strand at 357.698 kb on + strand at 357.700 kb on + strand at 357.700 kb on + strand at 357.706 kb on + strand at 357.717 kb on + strand at 357.718 kb on - strand at 357.743 kb on + strand at 357.744 kb on - strand at 357.744 kb on - strand at 357.744 kb on - strand at 357.828 kb on + strand at 357.829 kb on - strand at 358.347 kb on - strand, within Pf1N1B4_304 at 358.384 kb on - strand, within Pf1N1B4_304 at 358.384 kb on - strand, within Pf1N1B4_304 at 358.441 kb on - strand, within Pf1N1B4_304 at 358.533 kb on + strand at 358.534 kb on - strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.561 kb on + strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.562 kb on - strand at 358.603 kb on + strand at 358.604 kb on - strand at 358.629 kb on + strand at 358.629 kb on + strand at 358.630 kb on - strand at 358.630 kb on - strand at 358.688 kb on + strand at 358.688 kb on + strand at 358.781 kb on + strand at 358.782 kb on - strand at 358.800 kb on + strand at 358.801 kb on - strand at 358.857 kb on + strand at 358.858 kb on - strand at 359.107 kb on + strand, within Pf1N1B4_305 at 359.108 kb on - strand, within Pf1N1B4_305 at 359.492 kb on + strand, within Pf1N1B4_305 at 359.492 kb on + strand, within Pf1N1B4_305
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 200 mM remove 356,773 + Pf1N1B4_303 0.48 -1.5 356,773 + Pf1N1B4_303 0.48 -1.4 357,061 + Pf1N1B4_303 0.68 -0.2 357,125 + -0.2 357,156 + Pf1N1B4_303 0.75 -0.6 357,156 + Pf1N1B4_303 0.75 +1.4 357,156 + Pf1N1B4_303 0.75 -1.0 357,156 + Pf1N1B4_303 0.75 -1.2 357,156 + Pf1N1B4_303 0.75 +0.8 357,156 + Pf1N1B4_303 0.75 +1.4 357,157 - Pf1N1B4_303 0.75 -1.2 357,157 - Pf1N1B4_303 0.75 +0.2 357,157 - Pf1N1B4_303 0.75 +0.2 357,157 - Pf1N1B4_303 0.75 -0.2 357,157 - Pf1N1B4_303 0.75 -0.2 357,277 + Pf1N1B4_303 0.83 -0.6 357,277 + Pf1N1B4_303 0.83 +0.2 357,277 + Pf1N1B4_303 0.83 +1.5 357,277 + Pf1N1B4_303 0.83 +0.3 357,277 + Pf1N1B4_303 0.83 -0.9 357,277 + Pf1N1B4_303 0.83 +1.1 357,277 + Pf1N1B4_303 0.83 -0.3 357,277 + Pf1N1B4_303 0.83 -0.8 357,278 - -0.2 357,304 + Pf1N1B4_303 0.85 +0.8 357,598 + +0.4 357,671 + +1.3 357,681 + -0.9 357,681 + -1.6 357,681 + -0.3 357,698 + -0.5 357,700 + -1.5 357,700 + -0.5 357,706 + +0.5 357,717 + +0.9 357,718 - -0.8 357,743 + -0.8 357,744 - -1.5 357,744 - -0.7 357,744 - -2.0 357,828 + -0.4 357,829 - -1.3 358,347 - Pf1N1B4_304 0.74 -1.2 358,384 - Pf1N1B4_304 0.78 +0.8 358,384 - Pf1N1B4_304 0.78 -2.8 358,441 - Pf1N1B4_304 0.85 +0.5 358,533 + +0.8 358,534 - -1.5 358,561 + -1.8 358,561 + +0.4 358,561 + -0.5 358,561 + +1.4 358,561 + +0.8 358,561 + +0.1 358,561 + -0.7 358,562 - -1.1 358,562 - +0.3 358,562 - -0.2 358,562 - +0.3 358,562 - +0.2 358,603 + -0.3 358,604 - -0.5 358,629 + +1.5 358,629 + -0.0 358,630 - -0.6 358,630 - +0.1 358,688 + +1.4 358,688 + -1.7 358,781 + -1.2 358,782 - +0.0 358,800 + -0.8 358,801 - -1.2 358,857 + +1.0 358,858 - +0.1 359,107 + Pf1N1B4_305 0.23 +0.8 359,108 - Pf1N1B4_305 0.23 -0.3 359,492 + Pf1N1B4_305 0.49 -0.2 359,492 + Pf1N1B4_305 0.49 -1.7
Or see this region's nucleotide sequence