Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1261

Experiment: Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1259 and Pf1N1B4_1260 are separated by 94 nucleotidesPf1N1B4_1260 and Pf1N1B4_1261 are separated by 148 nucleotidesPf1N1B4_1261 and Pf1N1B4_1262 are separated by 191 nucleotides Pf1N1B4_1259 - Multidrug resistance transporter, Bcr/CflA family, at 1,439,690 to 1,440,886 _1259 Pf1N1B4_1260 - Copper chaperone, at 1,440,981 to 1,441,178 _1260 Pf1N1B4_1261 - FIG00953575: hypothetical protein, at 1,441,327 to 1,441,710 _1261 Pf1N1B4_1262 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 1,441,902 to 1,444,295 _1262 Position (kb) 1441 1442Strain fitness (log2 ratio) -2 -1 0 1 2at 1440.529 kb on + strand, within Pf1N1B4_1259at 1440.529 kb on + strand, within Pf1N1B4_1259at 1440.530 kb on - strand, within Pf1N1B4_1259at 1440.624 kb on + strand, within Pf1N1B4_1259at 1440.625 kb on - strand, within Pf1N1B4_1259at 1440.745 kb on - strand, within Pf1N1B4_1259at 1440.819 kb on + strandat 1440.820 kb on - strandat 1440.901 kb on - strandat 1440.901 kb on - strandat 1440.901 kb on - strandat 1440.970 kb on + strandat 1440.974 kb on - strandat 1441.000 kb on + strandat 1441.000 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.300 kb on + strandat 1441.301 kb on - strandat 1441.301 kb on - strandat 1441.301 kb on - strandat 1441.301 kb on - strandat 1441.301 kb on - strandat 1441.301 kb on - strandat 1441.367 kb on + strand, within Pf1N1B4_1261at 1441.367 kb on + strand, within Pf1N1B4_1261at 1441.367 kb on + strand, within Pf1N1B4_1261at 1441.367 kb on + strand, within Pf1N1B4_1261at 1441.367 kb on + strand, within Pf1N1B4_1261at 1441.368 kb on - strand, within Pf1N1B4_1261at 1441.408 kb on + strandat 1441.471 kb on + strand, within Pf1N1B4_1261at 1441.472 kb on - strand, within Pf1N1B4_1261at 1441.472 kb on - strand, within Pf1N1B4_1261at 1441.472 kb on - strand, within Pf1N1B4_1261at 1441.488 kb on - strand, within Pf1N1B4_1261at 1441.681 kb on + strandat 1441.681 kb on + strandat 1441.681 kb on + strandat 1441.681 kb on + strandat 1441.681 kb on + strandat 1441.681 kb on + strandat 1441.682 kb on - strandat 1441.682 kb on - strandat 1441.682 kb on - strandat 1441.682 kb on - strandat 1441.682 kb on - strandat 1441.682 kb on - strandat 1441.682 kb on - strandat 1441.875 kb on - strandat 1441.875 kb on - strandat 1441.875 kb on - strandat 1441.878 kb on + strandat 1441.878 kb on + strandat 1441.886 kb on - strandat 1442.299 kb on - strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.514 kb on + strand, within Pf1N1B4_1262at 1442.515 kb on - strand, within Pf1N1B4_1262at 1442.515 kb on - strand, within Pf1N1B4_1262at 1442.515 kb on - strandat 1442.515 kb on - strand, within Pf1N1B4_1262at 1442.515 kb on - strand, within Pf1N1B4_1262at 1442.515 kb on - strand, within Pf1N1B4_1262at 1442.515 kb on - strand, within Pf1N1B4_1262at 1442.515 kb on - strand, within Pf1N1B4_1262at 1442.646 kb on + strand, within Pf1N1B4_1262at 1442.646 kb on + strand, within Pf1N1B4_1262at 1442.646 kb on + strand, within Pf1N1B4_1262at 1442.646 kb on + strand, within Pf1N1B4_1262at 1442.646 kb on + strand, within Pf1N1B4_1262at 1442.665 kb on + strand, within Pf1N1B4_1262at 1442.694 kb on + strand, within Pf1N1B4_1262at 1442.694 kb on + strand, within Pf1N1B4_1262at 1442.694 kb on + strand, within Pf1N1B4_1262at 1442.695 kb on - strand, within Pf1N1B4_1262at 1442.695 kb on - strand, within Pf1N1B4_1262at 1442.695 kb on - strand, within Pf1N1B4_1262

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 200 mM
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1,440,529 + Pf1N1B4_1259 0.70 -0.0
1,440,529 + Pf1N1B4_1259 0.70 -1.5
1,440,530 - Pf1N1B4_1259 0.70 -1.3
1,440,624 + Pf1N1B4_1259 0.78 -0.5
1,440,625 - Pf1N1B4_1259 0.78 -1.0
1,440,745 - Pf1N1B4_1259 0.88 +0.3
1,440,819 + +1.0
1,440,820 - +1.0
1,440,901 - -1.3
1,440,901 - +1.8
1,440,901 - -0.3
1,440,970 + +0.4
1,440,974 - -1.5
1,441,000 + +0.7
1,441,000 + -0.0
1,441,300 + -1.3
1,441,300 + -2.2
1,441,300 + +0.3
1,441,300 + -1.1
1,441,300 + +0.4
1,441,300 + -0.3
1,441,300 + +0.7
1,441,300 + -0.7
1,441,300 + -0.0
1,441,301 - +1.3
1,441,301 - +1.3
1,441,301 - +0.3
1,441,301 - +0.7
1,441,301 - +1.3
1,441,301 - +0.8
1,441,367 + Pf1N1B4_1261 0.10 -1.3
1,441,367 + Pf1N1B4_1261 0.10 +0.3
1,441,367 + Pf1N1B4_1261 0.10 -2.3
1,441,367 + Pf1N1B4_1261 0.10 +1.3
1,441,367 + Pf1N1B4_1261 0.10 -1.1
1,441,368 - Pf1N1B4_1261 0.11 -0.6
1,441,408 + -0.3
1,441,471 + Pf1N1B4_1261 0.38 -1.2
1,441,472 - Pf1N1B4_1261 0.38 -0.6
1,441,472 - Pf1N1B4_1261 0.38 -1.3
1,441,472 - Pf1N1B4_1261 0.38 -1.0
1,441,488 - Pf1N1B4_1261 0.42 -1.5
1,441,681 + -1.0
1,441,681 + -1.5
1,441,681 + -0.3
1,441,681 + -1.7
1,441,681 + -0.0
1,441,681 + -0.7
1,441,682 - +2.4
1,441,682 - +1.1
1,441,682 - -1.0
1,441,682 - +0.3
1,441,682 - -2.4
1,441,682 - -0.6
1,441,682 - +0.3
1,441,875 - -0.2
1,441,875 - +0.1
1,441,875 - -0.9
1,441,878 + +0.7
1,441,878 + +0.4
1,441,886 - -0.7
1,442,299 - Pf1N1B4_1262 0.17 -1.7
1,442,514 + Pf1N1B4_1262 0.26 -0.7
1,442,514 + Pf1N1B4_1262 0.26 -0.6
1,442,514 + Pf1N1B4_1262 0.26 -0.7
1,442,514 + Pf1N1B4_1262 0.26 -0.0
1,442,514 + Pf1N1B4_1262 0.26 -0.7
1,442,514 + Pf1N1B4_1262 0.26 -2.4
1,442,514 + Pf1N1B4_1262 0.26 +0.1
1,442,514 + Pf1N1B4_1262 0.26 +0.3
1,442,514 + Pf1N1B4_1262 0.26 -0.3
1,442,514 + Pf1N1B4_1262 0.26 +1.3
1,442,514 + Pf1N1B4_1262 0.26 +2.0
1,442,515 - Pf1N1B4_1262 0.26 +0.3
1,442,515 - Pf1N1B4_1262 0.26 -2.5
1,442,515 - -0.7
1,442,515 - Pf1N1B4_1262 0.26 -1.3
1,442,515 - Pf1N1B4_1262 0.26 +1.0
1,442,515 - Pf1N1B4_1262 0.26 -1.7
1,442,515 - Pf1N1B4_1262 0.26 +0.7
1,442,515 - Pf1N1B4_1262 0.26 +0.3
1,442,646 + Pf1N1B4_1262 0.31 +0.5
1,442,646 + Pf1N1B4_1262 0.31 -0.7
1,442,646 + Pf1N1B4_1262 0.31 -1.4
1,442,646 + Pf1N1B4_1262 0.31 +1.7
1,442,646 + Pf1N1B4_1262 0.31 +1.3
1,442,665 + Pf1N1B4_1262 0.32 -0.6
1,442,694 + Pf1N1B4_1262 0.33 -2.2
1,442,694 + Pf1N1B4_1262 0.33 -0.5
1,442,694 + Pf1N1B4_1262 0.33 +1.0
1,442,695 - Pf1N1B4_1262 0.33 +0.4
1,442,695 - Pf1N1B4_1262 0.33 -0.3
1,442,695 - Pf1N1B4_1262 0.33 +1.3

Or see this region's nucleotide sequence