Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19160

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19155 and ABZR86_RS19160 overlap by 4 nucleotidesABZR86_RS19160 and ABZR86_RS19165 are separated by 7 nucleotides ABZR86_RS19155: ABZR86_RS19155 - heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein, at 278,543 to 279,607 _RS19155 ABZR86_RS19160: ABZR86_RS19160 - family 20 glycosylhydrolase, at 279,604 to 281,937 _RS19160 ABZR86_RS19165: ABZR86_RS19165 - TonB-dependent receptor, at 281,945 to 284,665 _RS19165 Position (kb) 279 280 281 282Strain fitness (log2 ratio) -2 -1 0 1at 278.619 kb on + strandat 279.075 kb on + strand, within ABZR86_RS19155at 279.076 kb on - strand, within ABZR86_RS19155at 279.217 kb on - strand, within ABZR86_RS19155at 279.228 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.266 kb on + strand, within ABZR86_RS19155at 279.432 kb on - strand, within ABZR86_RS19155at 279.513 kb on + strandat 279.513 kb on + strandat 279.514 kb on - strandat 279.655 kb on + strandat 279.663 kb on - strandat 279.724 kb on + strandat 279.782 kb on - strandat 279.782 kb on - strandat 279.782 kb on - strandat 279.814 kb on - strandat 279.986 kb on + strand, within ABZR86_RS19160at 279.986 kb on + strand, within ABZR86_RS19160at 280.335 kb on - strand, within ABZR86_RS19160at 280.590 kb on - strand, within ABZR86_RS19160at 280.590 kb on - strand, within ABZR86_RS19160at 280.655 kb on + strand, within ABZR86_RS19160at 280.655 kb on + strand, within ABZR86_RS19160at 280.655 kb on + strand, within ABZR86_RS19160at 280.665 kb on - strand, within ABZR86_RS19160at 280.670 kb on + strand, within ABZR86_RS19160at 280.671 kb on - strand, within ABZR86_RS19160at 280.956 kb on + strand, within ABZR86_RS19160at 280.957 kb on - strand, within ABZR86_RS19160at 280.958 kb on + strand, within ABZR86_RS19160at 280.958 kb on + strand, within ABZR86_RS19160at 280.959 kb on - strand, within ABZR86_RS19160at 281.033 kb on + strand, within ABZR86_RS19160at 281.033 kb on + strand, within ABZR86_RS19160at 281.034 kb on - strand, within ABZR86_RS19160at 281.040 kb on - strand, within ABZR86_RS19160at 281.093 kb on + strand, within ABZR86_RS19160at 281.177 kb on + strand, within ABZR86_RS19160at 281.210 kb on + strand, within ABZR86_RS19160at 281.211 kb on - strand, within ABZR86_RS19160at 281.410 kb on - strand, within ABZR86_RS19160at 281.410 kb on - strand, within ABZR86_RS19160at 281.410 kb on - strand, within ABZR86_RS19160at 281.653 kb on - strand, within ABZR86_RS19160at 281.831 kb on - strandat 281.929 kb on + strandat 281.930 kb on - strandat 281.973 kb on + strandat 281.992 kb on - strandat 282.024 kb on + strandat 282.025 kb on - strandat 282.034 kb on - strandat 282.118 kb on + strandat 282.118 kb on + strandat 282.120 kb on + strandat 282.121 kb on - strandat 282.121 kb on - strandat 282.121 kb on - strandat 282.171 kb on + strandat 282.172 kb on - strandat 282.172 kb on - strandat 282.223 kb on - strand, within ABZR86_RS19165at 282.223 kb on - strand, within ABZR86_RS19165at 282.225 kb on + strand, within ABZR86_RS19165at 282.297 kb on + strand, within ABZR86_RS19165at 282.297 kb on + strand, within ABZR86_RS19165at 282.298 kb on - strand, within ABZR86_RS19165at 282.303 kb on + strand, within ABZR86_RS19165at 282.303 kb on + strand, within ABZR86_RS19165at 282.457 kb on - strand, within ABZR86_RS19165at 282.534 kb on + strand, within ABZR86_RS19165at 282.534 kb on + strand, within ABZR86_RS19165at 282.534 kb on + strand, within ABZR86_RS19165at 282.534 kb on + strand, within ABZR86_RS19165at 282.534 kb on + strand, within ABZR86_RS19165at 282.628 kb on - strand, within ABZR86_RS19165at 282.769 kb on - strand, within ABZR86_RS19165at 282.799 kb on + strand, within ABZR86_RS19165at 282.801 kb on + strand, within ABZR86_RS19165at 282.845 kb on + strand, within ABZR86_RS19165at 282.870 kb on + strand, within ABZR86_RS19165at 282.890 kb on - strand, within ABZR86_RS19165at 282.890 kb on - strand, within ABZR86_RS19165at 282.890 kb on - strand, within ABZR86_RS19165at 282.898 kb on - strand, within ABZR86_RS19165at 282.898 kb on - strand, within ABZR86_RS19165

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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278,619 + +0.2
279,075 + ABZR86_RS19155 0.50 -0.3
279,076 - ABZR86_RS19155 0.50 -0.4
279,217 - ABZR86_RS19155 0.63 -0.1
279,228 - ABZR86_RS19155 0.64 -0.6
279,257 - ABZR86_RS19155 0.67 +0.4
279,257 - ABZR86_RS19155 0.67 +0.2
279,257 - ABZR86_RS19155 0.67 +0.1
279,257 - ABZR86_RS19155 0.67 -0.1
279,266 + ABZR86_RS19155 0.68 -0.3
279,432 - ABZR86_RS19155 0.83 -0.3
279,513 + +0.6
279,513 + -0.4
279,514 - -0.2
279,655 + -0.2
279,663 - +0.1
279,724 + +0.7
279,782 - -0.2
279,782 - -0.3
279,782 - -0.6
279,814 - +0.4
279,986 + ABZR86_RS19160 0.16 +0.9
279,986 + ABZR86_RS19160 0.16 -0.2
280,335 - ABZR86_RS19160 0.31 -0.1
280,590 - ABZR86_RS19160 0.42 -0.1
280,590 - ABZR86_RS19160 0.42 -0.0
280,655 + ABZR86_RS19160 0.45 +0.5
280,655 + ABZR86_RS19160 0.45 -0.2
280,655 + ABZR86_RS19160 0.45 -0.5
280,665 - ABZR86_RS19160 0.45 -0.1
280,670 + ABZR86_RS19160 0.46 -0.4
280,671 - ABZR86_RS19160 0.46 +0.5
280,956 + ABZR86_RS19160 0.58 +0.7
280,957 - ABZR86_RS19160 0.58 +0.6
280,958 + ABZR86_RS19160 0.58 -0.6
280,958 + ABZR86_RS19160 0.58 -0.2
280,959 - ABZR86_RS19160 0.58 +0.6
281,033 + ABZR86_RS19160 0.61 -0.0
281,033 + ABZR86_RS19160 0.61 -0.2
281,034 - ABZR86_RS19160 0.61 -0.3
281,040 - ABZR86_RS19160 0.62 +0.8
281,093 + ABZR86_RS19160 0.64 -2.7
281,177 + ABZR86_RS19160 0.67 -0.3
281,210 + ABZR86_RS19160 0.69 -0.6
281,211 - ABZR86_RS19160 0.69 -0.4
281,410 - ABZR86_RS19160 0.77 -0.3
281,410 - ABZR86_RS19160 0.77 -0.6
281,410 - ABZR86_RS19160 0.77 +0.4
281,653 - ABZR86_RS19160 0.88 -0.1
281,831 - -0.1
281,929 + -0.6
281,930 - +0.3
281,973 + -0.7
281,992 - +1.2
282,024 + -0.3
282,025 - +0.6
282,034 - -0.2
282,118 + -0.3
282,118 + +0.1
282,120 + -0.2
282,121 - -0.2
282,121 - +0.3
282,121 - +0.3
282,171 + -0.8
282,172 - -0.3
282,172 - +0.1
282,223 - ABZR86_RS19165 0.10 +0.1
282,223 - ABZR86_RS19165 0.10 -0.5
282,225 + ABZR86_RS19165 0.10 +0.2
282,297 + ABZR86_RS19165 0.13 +0.7
282,297 + ABZR86_RS19165 0.13 -0.3
282,298 - ABZR86_RS19165 0.13 +1.4
282,303 + ABZR86_RS19165 0.13 +0.3
282,303 + ABZR86_RS19165 0.13 -0.2
282,457 - ABZR86_RS19165 0.19 -0.4
282,534 + ABZR86_RS19165 0.22 +0.1
282,534 + ABZR86_RS19165 0.22 +0.3
282,534 + ABZR86_RS19165 0.22 -0.0
282,534 + ABZR86_RS19165 0.22 +1.0
282,534 + ABZR86_RS19165 0.22 -0.5
282,628 - ABZR86_RS19165 0.25 -0.1
282,769 - ABZR86_RS19165 0.30 -0.2
282,799 + ABZR86_RS19165 0.31 -0.1
282,801 + ABZR86_RS19165 0.31 -0.1
282,845 + ABZR86_RS19165 0.33 -0.7
282,870 + ABZR86_RS19165 0.34 -0.3
282,890 - ABZR86_RS19165 0.35 -0.1
282,890 - ABZR86_RS19165 0.35 +0.1
282,890 - ABZR86_RS19165 0.35 -0.4
282,898 - ABZR86_RS19165 0.35 +0.1
282,898 - ABZR86_RS19165 0.35 -0.8

Or see this region's nucleotide sequence