Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18675 and ABZR86_RS18680 are separated by 170 nucleotides ABZR86_RS18680 and ABZR86_RS18685 are separated by 63 nucleotides
ABZR86_RS18675: ABZR86_RS18675 - phosphoglycerate kinase, at 160,172 to 161,335
_RS18675
ABZR86_RS18680: ABZR86_RS18680 - maleylacetoacetate isomerase, at 161,506 to 162,171
_RS18680
ABZR86_RS18685: ABZR86_RS18685 - PilT/PilU family type 4a pilus ATPase, at 162,235 to 163,350
_RS18685
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.650 kb on + strand, within ABZR86_RS18675 at 160.881 kb on + strand, within ABZR86_RS18675 at 160.881 kb on + strand, within ABZR86_RS18675 at 160.882 kb on - strand, within ABZR86_RS18675 at 160.965 kb on + strand, within ABZR86_RS18675 at 160.966 kb on - strand, within ABZR86_RS18675 at 161.068 kb on - strand, within ABZR86_RS18675 at 161.068 kb on - strand, within ABZR86_RS18675 at 161.379 kb on + strand at 161.379 kb on + strand at 161.379 kb on + strand at 161.380 kb on - strand at 161.380 kb on - strand at 161.380 kb on - strand at 161.412 kb on - strand at 161.412 kb on - strand at 161.470 kb on + strand at 161.471 kb on - strand at 161.471 kb on - strand at 161.471 kb on - strand at 161.528 kb on - strand at 161.555 kb on - strand at 161.555 kb on - strand at 161.561 kb on + strand at 161.594 kb on - strand, within ABZR86_RS18680 at 161.651 kb on - strand, within ABZR86_RS18680 at 161.734 kb on + strand, within ABZR86_RS18680 at 161.734 kb on + strand, within ABZR86_RS18680 at 161.734 kb on + strand, within ABZR86_RS18680 at 161.735 kb on - strand, within ABZR86_RS18680 at 161.735 kb on - strand, within ABZR86_RS18680 at 161.735 kb on - strand, within ABZR86_RS18680 at 161.863 kb on + strand, within ABZR86_RS18680 at 161.864 kb on - strand, within ABZR86_RS18680 at 161.864 kb on - strand, within ABZR86_RS18680 at 162.037 kb on + strand, within ABZR86_RS18680 at 162.236 kb on + strand at 162.237 kb on - strand at 162.237 kb on - strand at 162.237 kb on - strand at 162.237 kb on - strand at 162.251 kb on + strand at 162.380 kb on + strand, within ABZR86_RS18685 at 162.380 kb on + strand, within ABZR86_RS18685 at 162.381 kb on - strand, within ABZR86_RS18685 at 162.381 kb on - strand, within ABZR86_RS18685 at 162.381 kb on - strand, within ABZR86_RS18685 at 162.381 kb on - strand, within ABZR86_RS18685 at 162.381 kb on - strand, within ABZR86_RS18685 at 162.390 kb on - strand, within ABZR86_RS18685 at 162.390 kb on - strand, within ABZR86_RS18685 at 162.390 kb on - strand, within ABZR86_RS18685 at 162.797 kb on + strand, within ABZR86_RS18685 at 162.797 kb on + strand, within ABZR86_RS18685 at 162.797 kb on + strand, within ABZR86_RS18685 at 162.798 kb on - strand, within ABZR86_RS18685 at 162.798 kb on - strand, within ABZR86_RS18685 at 162.798 kb on - strand, within ABZR86_RS18685 at 162.798 kb on - strand, within ABZR86_RS18685 at 162.798 kb on - strand, within ABZR86_RS18685 at 162.798 kb on - strand, within ABZR86_RS18685 at 162.860 kb on + strand, within ABZR86_RS18685 at 162.860 kb on + strand, within ABZR86_RS18685 at 162.861 kb on - strand, within ABZR86_RS18685 at 162.861 kb on - strand, within ABZR86_RS18685 at 162.861 kb on - strand, within ABZR86_RS18685
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 160,650 + ABZR86_RS18675 0.41 -0.7 160,881 + ABZR86_RS18675 0.61 -0.4 160,881 + ABZR86_RS18675 0.61 -1.3 160,882 - ABZR86_RS18675 0.61 +0.1 160,965 + ABZR86_RS18675 0.68 -0.1 160,966 - ABZR86_RS18675 0.68 +1.7 161,068 - ABZR86_RS18675 0.77 -0.6 161,068 - ABZR86_RS18675 0.77 -2.1 161,379 + +0.2 161,379 + -0.2 161,379 + +0.2 161,380 - -0.3 161,380 - +2.4 161,380 - -0.5 161,412 - -0.1 161,412 - +0.5 161,470 + +0.0 161,471 - -0.3 161,471 - -0.7 161,471 - +0.3 161,528 - -0.8 161,555 - +0.7 161,555 - -1.1 161,561 + -0.9 161,594 - ABZR86_RS18680 0.13 -0.6 161,651 - ABZR86_RS18680 0.22 +0.8 161,734 + ABZR86_RS18680 0.34 -1.0 161,734 + ABZR86_RS18680 0.34 -1.5 161,734 + ABZR86_RS18680 0.34 -0.3 161,735 - ABZR86_RS18680 0.34 -0.1 161,735 - ABZR86_RS18680 0.34 -0.6 161,735 - ABZR86_RS18680 0.34 -0.1 161,863 + ABZR86_RS18680 0.54 -0.4 161,864 - ABZR86_RS18680 0.54 -1.1 161,864 - ABZR86_RS18680 0.54 -2.5 162,037 + ABZR86_RS18680 0.80 -1.1 162,236 + +2.1 162,237 - +0.4 162,237 - +0.2 162,237 - -0.4 162,237 - +0.3 162,251 + +0.0 162,380 + ABZR86_RS18685 0.13 +1.1 162,380 + ABZR86_RS18685 0.13 +0.9 162,381 - ABZR86_RS18685 0.13 +0.1 162,381 - ABZR86_RS18685 0.13 +0.7 162,381 - ABZR86_RS18685 0.13 -0.5 162,381 - ABZR86_RS18685 0.13 -0.2 162,381 - ABZR86_RS18685 0.13 +0.1 162,390 - ABZR86_RS18685 0.14 +0.1 162,390 - ABZR86_RS18685 0.14 +0.0 162,390 - ABZR86_RS18685 0.14 -0.2 162,797 + ABZR86_RS18685 0.50 -0.6 162,797 + ABZR86_RS18685 0.50 -0.8 162,797 + ABZR86_RS18685 0.50 -0.1 162,798 - ABZR86_RS18685 0.50 +0.5 162,798 - ABZR86_RS18685 0.50 +0.2 162,798 - ABZR86_RS18685 0.50 +0.2 162,798 - ABZR86_RS18685 0.50 -0.1 162,798 - ABZR86_RS18685 0.50 -1.2 162,798 - ABZR86_RS18685 0.50 +1.1 162,860 + ABZR86_RS18685 0.56 -0.4 162,860 + ABZR86_RS18685 0.56 +0.7 162,861 - ABZR86_RS18685 0.56 +0.1 162,861 - ABZR86_RS18685 0.56 -0.2 162,861 - ABZR86_RS18685 0.56 -0.2
Or see this region's nucleotide sequence