Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16930

Experiment: Paraquat dichloride 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS16925 and ABZR86_RS16930 are separated by 67 nucleotidesABZR86_RS16930 and ABZR86_RS16935 are separated by 224 nucleotidesABZR86_RS16935 and ABZR86_RS16940 are separated by 61 nucleotides ABZR86_RS16925: ABZR86_RS16925 - 2Fe-2S iron-sulfur cluster-binding protein, at 3,820,019 to 3,821,077 _RS16925 ABZR86_RS16930: ABZR86_RS16930 - rhodanese-like domain-containing protein, at 3,821,145 to 3,821,588 _RS16930 ABZR86_RS16935: ABZR86_RS16935 - hypothetical protein, at 3,821,813 to 3,822,229 _RS16935 ABZR86_RS16940: ABZR86_RS16940 - YiiD C-terminal domain-containing protein, at 3,822,291 to 3,822,758 _RS16940 Position (kb) 3821 3822Strain fitness (log2 ratio) -2 -1 0 1 2at 3820.182 kb on - strand, within ABZR86_RS16925at 3820.427 kb on + strand, within ABZR86_RS16925at 3820.428 kb on - strand, within ABZR86_RS16925at 3820.730 kb on + strand, within ABZR86_RS16925at 3820.730 kb on + strand, within ABZR86_RS16925at 3820.760 kb on + strand, within ABZR86_RS16925at 3820.761 kb on - strand, within ABZR86_RS16925at 3820.761 kb on - strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.922 kb on + strand, within ABZR86_RS16925at 3820.923 kb on - strand, within ABZR86_RS16925at 3820.923 kb on - strand, within ABZR86_RS16925at 3820.923 kb on - strand, within ABZR86_RS16925at 3820.923 kb on - strand, within ABZR86_RS16925at 3820.923 kb on - strand, within ABZR86_RS16925at 3821.000 kb on + strandat 3821.000 kb on + strandat 3821.001 kb on - strandat 3821.001 kb on - strandat 3821.003 kb on + strandat 3821.003 kb on + strandat 3821.003 kb on + strandat 3821.003 kb on + strandat 3821.003 kb on + strandat 3821.004 kb on - strandat 3821.004 kb on - strandat 3821.004 kb on - strandat 3821.004 kb on - strandat 3821.004 kb on - strandat 3821.018 kb on + strandat 3821.146 kb on + strandat 3821.146 kb on + strandat 3821.146 kb on + strandat 3821.146 kb on + strandat 3821.147 kb on - strandat 3821.147 kb on - strandat 3821.147 kb on - strandat 3821.147 kb on - strandat 3821.150 kb on + strandat 3821.150 kb on + strandat 3821.150 kb on + strandat 3821.150 kb on + strandat 3821.150 kb on + strandat 3821.151 kb on - strandat 3821.151 kb on - strandat 3821.151 kb on - strandat 3821.151 kb on - strandat 3821.210 kb on + strand, within ABZR86_RS16930at 3821.211 kb on - strand, within ABZR86_RS16930at 3821.211 kb on - strand, within ABZR86_RS16930at 3821.212 kb on + strand, within ABZR86_RS16930at 3821.212 kb on + strand, within ABZR86_RS16930at 3821.212 kb on + strand, within ABZR86_RS16930at 3821.212 kb on + strand, within ABZR86_RS16930at 3821.212 kb on + strand, within ABZR86_RS16930at 3821.213 kb on - strand, within ABZR86_RS16930at 3821.213 kb on - strand, within ABZR86_RS16930at 3821.213 kb on - strand, within ABZR86_RS16930at 3821.213 kb on - strand, within ABZR86_RS16930at 3821.213 kb on - strand, within ABZR86_RS16930at 3821.213 kb on - strand, within ABZR86_RS16930at 3821.213 kb on - strand, within ABZR86_RS16930at 3821.393 kb on - strand, within ABZR86_RS16930at 3821.393 kb on - strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.467 kb on + strand, within ABZR86_RS16930at 3821.468 kb on - strand, within ABZR86_RS16930at 3821.468 kb on - strand, within ABZR86_RS16930at 3821.633 kb on + strandat 3821.633 kb on + strandat 3821.634 kb on - strandat 3821.635 kb on + strandat 3821.635 kb on + strandat 3821.635 kb on + strandat 3821.636 kb on - strandat 3821.636 kb on - strandat 3821.636 kb on - strandat 3821.672 kb on + strandat 3821.673 kb on - strandat 3821.814 kb on + strandat 3821.814 kb on + strandat 3821.815 kb on - strandat 3821.878 kb on - strand, within ABZR86_RS16935at 3822.065 kb on + strand, within ABZR86_RS16935at 3822.065 kb on + strand, within ABZR86_RS16935at 3822.065 kb on + strand, within ABZR86_RS16935at 3822.126 kb on + strand, within ABZR86_RS16935at 3822.127 kb on - strand, within ABZR86_RS16935at 3822.127 kb on - strand, within ABZR86_RS16935at 3822.139 kb on + strand, within ABZR86_RS16935at 3822.407 kb on + strand, within ABZR86_RS16940at 3822.407 kb on + strand, within ABZR86_RS16940at 3822.407 kb on + strand, within ABZR86_RS16940at 3822.408 kb on - strand, within ABZR86_RS16940at 3822.408 kb on - strand, within ABZR86_RS16940at 3822.484 kb on + strand, within ABZR86_RS16940at 3822.484 kb on + strand, within ABZR86_RS16940at 3822.484 kb on + strand, within ABZR86_RS16940at 3822.484 kb on + strand, within ABZR86_RS16940at 3822.485 kb on - strand, within ABZR86_RS16940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
remove
3,820,182 - ABZR86_RS16925 0.15 -0.9
3,820,427 + ABZR86_RS16925 0.39 -0.6
3,820,428 - ABZR86_RS16925 0.39 -1.3
3,820,730 + ABZR86_RS16925 0.67 -0.4
3,820,730 + ABZR86_RS16925 0.67 +0.1
3,820,760 + ABZR86_RS16925 0.70 -0.6
3,820,761 - ABZR86_RS16925 0.70 +0.8
3,820,761 - ABZR86_RS16925 0.70 +0.0
3,820,922 + ABZR86_RS16925 0.85 -0.8
3,820,922 + ABZR86_RS16925 0.85 -0.5
3,820,922 + ABZR86_RS16925 0.85 -1.3
3,820,922 + ABZR86_RS16925 0.85 -0.7
3,820,922 + ABZR86_RS16925 0.85 -0.7
3,820,922 + ABZR86_RS16925 0.85 -0.6
3,820,922 + ABZR86_RS16925 0.85 +0.4
3,820,922 + ABZR86_RS16925 0.85 -0.2
3,820,923 - ABZR86_RS16925 0.85 -2.1
3,820,923 - ABZR86_RS16925 0.85 -0.6
3,820,923 - ABZR86_RS16925 0.85 -0.0
3,820,923 - ABZR86_RS16925 0.85 +1.8
3,820,923 - ABZR86_RS16925 0.85 -0.1
3,821,000 + -1.4
3,821,000 + -0.6
3,821,001 - -1.1
3,821,001 - -0.7
3,821,003 + -0.2
3,821,003 + +0.4
3,821,003 + -0.2
3,821,003 + -0.3
3,821,003 + -0.6
3,821,004 - -0.4
3,821,004 - -0.4
3,821,004 - -0.4
3,821,004 - -0.3
3,821,004 - +0.5
3,821,018 + -1.8
3,821,146 + +0.3
3,821,146 + -0.3
3,821,146 + +0.2
3,821,146 + +0.2
3,821,147 - +0.1
3,821,147 - +1.1
3,821,147 - -0.9
3,821,147 - +0.4
3,821,150 + -0.3
3,821,150 + -0.3
3,821,150 + +0.4
3,821,150 + -0.1
3,821,150 + -1.0
3,821,151 - -0.3
3,821,151 - +0.3
3,821,151 - -1.2
3,821,151 - -0.2
3,821,210 + ABZR86_RS16930 0.15 -0.5
3,821,211 - ABZR86_RS16930 0.15 -1.8
3,821,211 - ABZR86_RS16930 0.15 -2.2
3,821,212 + ABZR86_RS16930 0.15 -1.6
3,821,212 + ABZR86_RS16930 0.15 +0.3
3,821,212 + ABZR86_RS16930 0.15 -0.6
3,821,212 + ABZR86_RS16930 0.15 -1.4
3,821,212 + ABZR86_RS16930 0.15 -0.3
3,821,213 - ABZR86_RS16930 0.15 -0.2
3,821,213 - ABZR86_RS16930 0.15 -0.3
3,821,213 - ABZR86_RS16930 0.15 -0.9
3,821,213 - ABZR86_RS16930 0.15 +0.4
3,821,213 - ABZR86_RS16930 0.15 -1.1
3,821,213 - ABZR86_RS16930 0.15 -1.2
3,821,213 - ABZR86_RS16930 0.15 -0.3
3,821,393 - ABZR86_RS16930 0.56 -1.2
3,821,393 - ABZR86_RS16930 0.56 -1.1
3,821,467 + ABZR86_RS16930 0.73 -0.6
3,821,467 + ABZR86_RS16930 0.73 -0.2
3,821,467 + ABZR86_RS16930 0.73 +0.2
3,821,467 + ABZR86_RS16930 0.73 -1.5
3,821,467 + ABZR86_RS16930 0.73 +0.7
3,821,467 + ABZR86_RS16930 0.73 -1.9
3,821,467 + ABZR86_RS16930 0.73 -1.4
3,821,467 + ABZR86_RS16930 0.73 -0.7
3,821,467 + ABZR86_RS16930 0.73 -0.7
3,821,468 - ABZR86_RS16930 0.73 +0.0
3,821,468 - ABZR86_RS16930 0.73 -1.6
3,821,633 + -0.1
3,821,633 + -0.3
3,821,634 - -0.8
3,821,635 + +0.1
3,821,635 + +1.3
3,821,635 + -1.5
3,821,636 - +0.2
3,821,636 - +0.2
3,821,636 - +0.2
3,821,672 + -0.4
3,821,673 - +0.2
3,821,814 + -0.4
3,821,814 + -0.9
3,821,815 - -0.1
3,821,878 - ABZR86_RS16935 0.16 +0.7
3,822,065 + ABZR86_RS16935 0.60 +0.1
3,822,065 + ABZR86_RS16935 0.60 -0.2
3,822,065 + ABZR86_RS16935 0.60 +0.1
3,822,126 + ABZR86_RS16935 0.75 +0.1
3,822,127 - ABZR86_RS16935 0.75 -1.2
3,822,127 - ABZR86_RS16935 0.75 -0.1
3,822,139 + ABZR86_RS16935 0.78 +0.2
3,822,407 + ABZR86_RS16940 0.25 -0.1
3,822,407 + ABZR86_RS16940 0.25 +0.6
3,822,407 + ABZR86_RS16940 0.25 -0.1
3,822,408 - ABZR86_RS16940 0.25 -0.4
3,822,408 - ABZR86_RS16940 0.25 -1.0
3,822,484 + ABZR86_RS16940 0.41 -1.6
3,822,484 + ABZR86_RS16940 0.41 -0.1
3,822,484 + ABZR86_RS16940 0.41 +0.2
3,822,484 + ABZR86_RS16940 0.41 +0.2
3,822,485 - ABZR86_RS16940 0.41 -0.4

Or see this region's nucleotide sequence