Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16865 and ABZR86_RS16870 overlap by 1 nucleotides ABZR86_RS16870 and ABZR86_RS16875 are separated by 59 nucleotides ABZR86_RS16875 and ABZR86_RS16880 are separated by 158 nucleotides
ABZR86_RS16865: ABZR86_RS16865 - EF-hand domain-containing protein, at 3,807,180 to 3,807,515
_RS16865
ABZR86_RS16870: ABZR86_RS16870 - GTP cyclohydrolase I FolE, at 3,807,515 to 3,808,114
_RS16870
ABZR86_RS16875: ABZR86_RS16875 - hypothetical protein, at 3,808,174 to 3,808,935
_RS16875
ABZR86_RS16880: ABZR86_RS16880 - shikimate 5-dehydrogenase, at 3,809,094 to 3,809,909
_RS16880
Position (kb)
3808
3809 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3807.373 kb on + strand, within ABZR86_RS16865 at 3807.373 kb on + strand, within ABZR86_RS16865 at 3807.373 kb on + strand, within ABZR86_RS16865 at 3807.374 kb on - strand, within ABZR86_RS16865 at 3807.374 kb on - strand, within ABZR86_RS16865 at 3807.374 kb on - strand, within ABZR86_RS16865 at 3807.382 kb on + strand, within ABZR86_RS16865 at 3807.382 kb on + strand, within ABZR86_RS16865 at 3807.382 kb on + strand, within ABZR86_RS16865 at 3807.382 kb on + strand, within ABZR86_RS16865 at 3807.383 kb on - strand, within ABZR86_RS16865 at 3807.383 kb on - strand, within ABZR86_RS16865 at 3807.433 kb on + strand, within ABZR86_RS16865 at 3808.126 kb on - strand at 3808.126 kb on - strand at 3808.126 kb on - strand at 3808.149 kb on - strand at 3808.277 kb on + strand, within ABZR86_RS16875 at 3808.281 kb on - strand, within ABZR86_RS16875 at 3808.281 kb on - strand, within ABZR86_RS16875 at 3808.291 kb on + strand, within ABZR86_RS16875 at 3808.292 kb on - strand, within ABZR86_RS16875 at 3808.292 kb on - strand, within ABZR86_RS16875 at 3808.292 kb on - strand, within ABZR86_RS16875 at 3808.347 kb on - strand, within ABZR86_RS16875 at 3808.347 kb on - strand, within ABZR86_RS16875 at 3808.469 kb on + strand, within ABZR86_RS16875 at 3808.469 kb on + strand, within ABZR86_RS16875 at 3808.470 kb on - strand, within ABZR86_RS16875 at 3808.556 kb on + strand, within ABZR86_RS16875 at 3808.556 kb on + strand, within ABZR86_RS16875 at 3808.556 kb on + strand, within ABZR86_RS16875 at 3808.556 kb on + strand, within ABZR86_RS16875 at 3808.557 kb on - strand, within ABZR86_RS16875 at 3808.557 kb on - strand, within ABZR86_RS16875 at 3808.557 kb on - strand, within ABZR86_RS16875 at 3808.557 kb on - strand, within ABZR86_RS16875 at 3808.629 kb on + strand, within ABZR86_RS16875 at 3808.630 kb on - strand, within ABZR86_RS16875 at 3808.630 kb on - strand, within ABZR86_RS16875 at 3808.652 kb on + strand, within ABZR86_RS16875 at 3808.652 kb on + strand, within ABZR86_RS16875 at 3808.653 kb on - strand, within ABZR86_RS16875 at 3808.653 kb on - strand, within ABZR86_RS16875 at 3808.787 kb on + strand, within ABZR86_RS16875 at 3808.787 kb on + strand, within ABZR86_RS16875 at 3808.787 kb on + strand, within ABZR86_RS16875 at 3808.788 kb on - strand, within ABZR86_RS16875 at 3808.788 kb on - strand, within ABZR86_RS16875 at 3808.788 kb on - strand, within ABZR86_RS16875 at 3808.788 kb on - strand, within ABZR86_RS16875 at 3808.790 kb on + strand, within ABZR86_RS16875 at 3808.790 kb on + strand, within ABZR86_RS16875 at 3808.790 kb on + strand, within ABZR86_RS16875 at 3808.791 kb on - strand, within ABZR86_RS16875 at 3808.791 kb on - strand, within ABZR86_RS16875 at 3808.791 kb on - strand, within ABZR86_RS16875 at 3808.808 kb on + strand, within ABZR86_RS16875 at 3808.808 kb on + strand, within ABZR86_RS16875 at 3808.808 kb on + strand, within ABZR86_RS16875 at 3808.808 kb on + strand, within ABZR86_RS16875 at 3808.808 kb on + strand, within ABZR86_RS16875 at 3808.808 kb on + strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.809 kb on - strand, within ABZR86_RS16875 at 3808.841 kb on + strand, within ABZR86_RS16875 at 3809.055 kb on + strand at 3809.055 kb on + strand at 3809.055 kb on + strand at 3809.056 kb on - strand at 3809.056 kb on - strand at 3809.056 kb on - strand at 3809.056 kb on - strand at 3809.056 kb on - strand at 3809.056 kb on - strand at 3809.085 kb on + strand at 3809.085 kb on + strand at 3809.085 kb on + strand at 3809.085 kb on + strand at 3809.085 kb on + strand at 3809.085 kb on + strand at 3809.086 kb on - strand at 3809.178 kb on + strand, within ABZR86_RS16880 at 3809.178 kb on + strand, within ABZR86_RS16880 at 3809.179 kb on - strand, within ABZR86_RS16880 at 3809.184 kb on + strand, within ABZR86_RS16880 at 3809.185 kb on - strand, within ABZR86_RS16880 at 3809.185 kb on - strand, within ABZR86_RS16880 at 3809.185 kb on - strand, within ABZR86_RS16880 at 3809.185 kb on - strand, within ABZR86_RS16880 at 3809.205 kb on + strand, within ABZR86_RS16880 at 3809.205 kb on + strand, within ABZR86_RS16880 at 3809.206 kb on - strand, within ABZR86_RS16880 at 3809.206 kb on - strand, within ABZR86_RS16880 at 3809.206 kb on - strand, within ABZR86_RS16880 at 3809.206 kb on - strand, within ABZR86_RS16880 at 3809.211 kb on + strand, within ABZR86_RS16880 at 3809.211 kb on + strand, within ABZR86_RS16880 at 3809.211 kb on + strand, within ABZR86_RS16880 at 3809.211 kb on + strand, within ABZR86_RS16880 at 3809.211 kb on + strand, within ABZR86_RS16880 at 3809.211 kb on + strand, within ABZR86_RS16880 at 3809.212 kb on - strand, within ABZR86_RS16880 at 3809.212 kb on - strand, within ABZR86_RS16880 at 3809.366 kb on + strand, within ABZR86_RS16880 at 3809.366 kb on + strand, within ABZR86_RS16880 at 3809.366 kb on + strand, within ABZR86_RS16880 at 3809.400 kb on + strand, within ABZR86_RS16880 at 3809.400 kb on + strand, within ABZR86_RS16880 at 3809.400 kb on + strand, within ABZR86_RS16880 at 3809.400 kb on + strand, within ABZR86_RS16880 at 3809.401 kb on - strand, within ABZR86_RS16880 at 3809.401 kb on - strand, within ABZR86_RS16880 at 3809.401 kb on - strand, within ABZR86_RS16880 at 3809.401 kb on - strand, within ABZR86_RS16880 at 3809.401 kb on - strand, within ABZR86_RS16880 at 3809.412 kb on + strand, within ABZR86_RS16880 at 3809.596 kb on - strand, within ABZR86_RS16880 at 3809.596 kb on - strand, within ABZR86_RS16880 at 3809.596 kb on - strand, within ABZR86_RS16880 at 3809.847 kb on + strand at 3809.847 kb on + strand at 3809.847 kb on + strand at 3809.847 kb on + strand at 3809.848 kb on - strand at 3809.848 kb on - strand at 3809.848 kb on - strand at 3809.848 kb on - strand at 3809.848 kb on - strand at 3809.850 kb on - strand at 3809.908 kb on - strand at 3809.908 kb on - strand at 3809.908 kb on - strand at 3809.908 kb on - strand at 3809.913 kb on + strand at 3809.913 kb on + strand at 3809.914 kb on - strand at 3809.916 kb on + strand at 3809.916 kb on + strand at 3809.916 kb on + strand at 3809.916 kb on + strand at 3809.916 kb on + strand at 3809.917 kb on - strand at 3809.917 kb on - strand at 3809.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 3,807,373 + ABZR86_RS16865 0.57 -1.0 3,807,373 + ABZR86_RS16865 0.57 +0.1 3,807,373 + ABZR86_RS16865 0.57 +0.4 3,807,374 - ABZR86_RS16865 0.58 -0.4 3,807,374 - ABZR86_RS16865 0.58 -0.2 3,807,374 - ABZR86_RS16865 0.58 -0.1 3,807,382 + ABZR86_RS16865 0.60 +0.2 3,807,382 + ABZR86_RS16865 0.60 -0.0 3,807,382 + ABZR86_RS16865 0.60 +0.3 3,807,382 + ABZR86_RS16865 0.60 +0.5 3,807,383 - ABZR86_RS16865 0.60 +0.2 3,807,383 - ABZR86_RS16865 0.60 +0.6 3,807,433 + ABZR86_RS16865 0.75 +0.1 3,808,126 - -0.5 3,808,126 - -0.8 3,808,126 - +0.7 3,808,149 - -0.9 3,808,277 + ABZR86_RS16875 0.14 +0.3 3,808,281 - ABZR86_RS16875 0.14 +0.9 3,808,281 - ABZR86_RS16875 0.14 -0.4 3,808,291 + ABZR86_RS16875 0.15 +0.6 3,808,292 - ABZR86_RS16875 0.15 -0.1 3,808,292 - ABZR86_RS16875 0.15 +0.4 3,808,292 - ABZR86_RS16875 0.15 -0.1 3,808,347 - ABZR86_RS16875 0.23 +0.7 3,808,347 - ABZR86_RS16875 0.23 +0.1 3,808,469 + ABZR86_RS16875 0.39 -0.6 3,808,469 + ABZR86_RS16875 0.39 +0.7 3,808,470 - ABZR86_RS16875 0.39 +0.1 3,808,556 + ABZR86_RS16875 0.50 +0.0 3,808,556 + ABZR86_RS16875 0.50 +0.5 3,808,556 + ABZR86_RS16875 0.50 +0.5 3,808,556 + ABZR86_RS16875 0.50 +0.1 3,808,557 - ABZR86_RS16875 0.50 +0.2 3,808,557 - ABZR86_RS16875 0.50 +1.0 3,808,557 - ABZR86_RS16875 0.50 -0.0 3,808,557 - ABZR86_RS16875 0.50 -0.8 3,808,629 + ABZR86_RS16875 0.60 +1.9 3,808,630 - ABZR86_RS16875 0.60 -0.5 3,808,630 - ABZR86_RS16875 0.60 -0.3 3,808,652 + ABZR86_RS16875 0.63 +0.4 3,808,652 + ABZR86_RS16875 0.63 +0.8 3,808,653 - ABZR86_RS16875 0.63 +0.4 3,808,653 - ABZR86_RS16875 0.63 +0.8 3,808,787 + ABZR86_RS16875 0.80 +0.7 3,808,787 + ABZR86_RS16875 0.80 -0.2 3,808,787 + ABZR86_RS16875 0.80 +0.0 3,808,788 - ABZR86_RS16875 0.81 -0.1 3,808,788 - ABZR86_RS16875 0.81 +0.6 3,808,788 - ABZR86_RS16875 0.81 -0.2 3,808,788 - ABZR86_RS16875 0.81 -0.3 3,808,790 + ABZR86_RS16875 0.81 -0.0 3,808,790 + ABZR86_RS16875 0.81 +0.1 3,808,790 + ABZR86_RS16875 0.81 +0.9 3,808,791 - ABZR86_RS16875 0.81 -0.0 3,808,791 - ABZR86_RS16875 0.81 +0.1 3,808,791 - ABZR86_RS16875 0.81 +0.5 3,808,808 + ABZR86_RS16875 0.83 -0.3 3,808,808 + ABZR86_RS16875 0.83 +0.2 3,808,808 + ABZR86_RS16875 0.83 +0.0 3,808,808 + ABZR86_RS16875 0.83 +0.2 3,808,808 + ABZR86_RS16875 0.83 +0.5 3,808,808 + ABZR86_RS16875 0.83 +0.2 3,808,809 - ABZR86_RS16875 0.83 +0.5 3,808,809 - ABZR86_RS16875 0.83 +0.0 3,808,809 - ABZR86_RS16875 0.83 -0.6 3,808,809 - ABZR86_RS16875 0.83 +0.3 3,808,809 - ABZR86_RS16875 0.83 +1.0 3,808,809 - ABZR86_RS16875 0.83 +0.9 3,808,809 - ABZR86_RS16875 0.83 -1.2 3,808,809 - ABZR86_RS16875 0.83 +0.9 3,808,841 + ABZR86_RS16875 0.88 +0.4 3,809,055 + -0.2 3,809,055 + +1.0 3,809,055 + -0.4 3,809,056 - +0.1 3,809,056 - +0.3 3,809,056 - -0.8 3,809,056 - +1.5 3,809,056 - +0.0 3,809,056 - -0.9 3,809,085 + -0.2 3,809,085 + +0.2 3,809,085 + -0.1 3,809,085 + -0.3 3,809,085 + -0.3 3,809,085 + +0.3 3,809,086 - +0.3 3,809,178 + ABZR86_RS16880 0.10 +0.1 3,809,178 + ABZR86_RS16880 0.10 -0.6 3,809,179 - ABZR86_RS16880 0.10 -0.1 3,809,184 + ABZR86_RS16880 0.11 +0.0 3,809,185 - ABZR86_RS16880 0.11 -0.0 3,809,185 - ABZR86_RS16880 0.11 +0.8 3,809,185 - ABZR86_RS16880 0.11 -0.7 3,809,185 - ABZR86_RS16880 0.11 +0.2 3,809,205 + ABZR86_RS16880 0.14 -0.7 3,809,205 + ABZR86_RS16880 0.14 -0.1 3,809,206 - ABZR86_RS16880 0.14 +0.2 3,809,206 - ABZR86_RS16880 0.14 +0.2 3,809,206 - ABZR86_RS16880 0.14 +0.4 3,809,206 - ABZR86_RS16880 0.14 -1.2 3,809,211 + ABZR86_RS16880 0.14 -0.2 3,809,211 + ABZR86_RS16880 0.14 -0.1 3,809,211 + ABZR86_RS16880 0.14 +0.3 3,809,211 + ABZR86_RS16880 0.14 +0.2 3,809,211 + ABZR86_RS16880 0.14 -0.5 3,809,211 + ABZR86_RS16880 0.14 +1.3 3,809,212 - ABZR86_RS16880 0.14 +0.1 3,809,212 - ABZR86_RS16880 0.14 +0.2 3,809,366 + ABZR86_RS16880 0.33 -0.3 3,809,366 + ABZR86_RS16880 0.33 -0.0 3,809,366 + ABZR86_RS16880 0.33 -0.1 3,809,400 + ABZR86_RS16880 0.38 +0.4 3,809,400 + ABZR86_RS16880 0.38 -0.2 3,809,400 + ABZR86_RS16880 0.38 +0.2 3,809,400 + ABZR86_RS16880 0.38 +0.6 3,809,401 - ABZR86_RS16880 0.38 -0.2 3,809,401 - ABZR86_RS16880 0.38 +0.3 3,809,401 - ABZR86_RS16880 0.38 +2.2 3,809,401 - ABZR86_RS16880 0.38 +0.6 3,809,401 - ABZR86_RS16880 0.38 +1.0 3,809,412 + ABZR86_RS16880 0.39 +0.6 3,809,596 - ABZR86_RS16880 0.62 +0.8 3,809,596 - ABZR86_RS16880 0.62 -0.6 3,809,596 - ABZR86_RS16880 0.62 -0.5 3,809,847 + +0.6 3,809,847 + +0.1 3,809,847 + +0.3 3,809,847 + -0.7 3,809,848 - -0.3 3,809,848 - +0.1 3,809,848 - +1.1 3,809,848 - -2.2 3,809,848 - -0.4 3,809,850 - -0.2 3,809,908 - -0.3 3,809,908 - -1.1 3,809,908 - -0.6 3,809,908 - +0.1 3,809,913 + -0.2 3,809,913 + -0.0 3,809,914 - +1.3 3,809,916 + +0.4 3,809,916 + +0.6 3,809,916 + +0.3 3,809,916 + -1.9 3,809,916 + -0.4 3,809,917 - +1.0 3,809,917 - -0.5 3,809,917 - -0.3
Or see this region's nucleotide sequence