Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16605

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16600 and ABZR86_RS16605 are separated by 36 nucleotidesABZR86_RS16605 and ABZR86_RS16610 are separated by 10 nucleotidesABZR86_RS16610 and ABZR86_RS16615 are separated by 153 nucleotides ABZR86_RS16600: ABZR86_RS16600 - hypothetical protein, at 3,746,002 to 3,751,902 _RS16600 ABZR86_RS16605: ABZR86_RS16605 - RHS repeat-associated core domain-containing protein, at 3,751,939 to 3,752,868 _RS16605 ABZR86_RS16610: ABZR86_RS16610 - hypothetical protein, at 3,752,879 to 3,753,394 _RS16610 ABZR86_RS16615: ABZR86_RS16615 - ankyrin repeat domain-containing protein, at 3,753,548 to 3,754,192 _RS16615 Position (kb) 3751 3752 3753Strain fitness (log2 ratio) -1 0 1 2at 3750.945 kb on + strand, within ABZR86_RS16600at 3750.945 kb on + strand, within ABZR86_RS16600at 3750.946 kb on - strand, within ABZR86_RS16600at 3751.012 kb on + strand, within ABZR86_RS16600at 3751.012 kb on + strand, within ABZR86_RS16600at 3751.012 kb on + strand, within ABZR86_RS16600at 3751.013 kb on - strand, within ABZR86_RS16600at 3751.297 kb on + strand, within ABZR86_RS16600at 3751.329 kb on + strandat 3751.412 kb on - strandat 3751.450 kb on + strandat 3751.553 kb on - strandat 3751.602 kb on - strandat 3751.634 kb on + strandat 3751.681 kb on + strandat 3751.721 kb on - strandat 3751.766 kb on - strandat 3751.971 kb on - strandat 3751.978 kb on - strandat 3751.978 kb on - strandat 3751.989 kb on - strandat 3751.989 kb on - strandat 3752.054 kb on + strand, within ABZR86_RS16605at 3752.078 kb on - strand, within ABZR86_RS16605at 3752.083 kb on + strand, within ABZR86_RS16605at 3752.083 kb on + strand, within ABZR86_RS16605at 3752.084 kb on - strand, within ABZR86_RS16605at 3752.134 kb on - strand, within ABZR86_RS16605at 3752.134 kb on - strand, within ABZR86_RS16605at 3752.177 kb on + strand, within ABZR86_RS16605at 3752.242 kb on + strand, within ABZR86_RS16605at 3752.243 kb on - strand, within ABZR86_RS16605at 3752.260 kb on + strand, within ABZR86_RS16605at 3752.261 kb on - strand, within ABZR86_RS16605at 3752.261 kb on - strand, within ABZR86_RS16605at 3752.308 kb on - strand, within ABZR86_RS16605at 3752.335 kb on - strand, within ABZR86_RS16605at 3752.516 kb on + strand, within ABZR86_RS16605at 3752.516 kb on + strand, within ABZR86_RS16605at 3752.517 kb on - strand, within ABZR86_RS16605at 3752.517 kb on - strand, within ABZR86_RS16605at 3752.525 kb on - strand, within ABZR86_RS16605at 3752.606 kb on + strand, within ABZR86_RS16605at 3752.652 kb on + strand, within ABZR86_RS16605at 3752.686 kb on - strand, within ABZR86_RS16605at 3752.731 kb on - strand, within ABZR86_RS16605at 3753.006 kb on + strand, within ABZR86_RS16610at 3753.007 kb on - strand, within ABZR86_RS16610at 3753.007 kb on - strand, within ABZR86_RS16610at 3753.007 kb on - strand, within ABZR86_RS16610at 3753.111 kb on - strand, within ABZR86_RS16610at 3753.127 kb on + strand, within ABZR86_RS16610at 3753.293 kb on - strand, within ABZR86_RS16610at 3753.304 kb on - strand, within ABZR86_RS16610at 3753.378 kb on + strandat 3753.378 kb on + strandat 3753.379 kb on - strandat 3753.427 kb on - strandat 3753.438 kb on - strandat 3753.530 kb on + strandat 3753.707 kb on + strand, within ABZR86_RS16615at 3753.767 kb on + strand, within ABZR86_RS16615at 3753.807 kb on + strand, within ABZR86_RS16615

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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3,750,945 + ABZR86_RS16600 0.84 +0.4
3,750,945 + ABZR86_RS16600 0.84 +0.4
3,750,946 - ABZR86_RS16600 0.84 -0.6
3,751,012 + ABZR86_RS16600 0.85 -0.1
3,751,012 + ABZR86_RS16600 0.85 +0.3
3,751,012 + ABZR86_RS16600 0.85 -1.0
3,751,013 - ABZR86_RS16600 0.85 +0.6
3,751,297 + ABZR86_RS16600 0.90 -0.2
3,751,329 + -1.3
3,751,412 - -0.2
3,751,450 + -0.2
3,751,553 - -0.5
3,751,602 - -0.3
3,751,634 + -0.2
3,751,681 + -0.5
3,751,721 - -0.2
3,751,766 - -0.3
3,751,971 - +0.9
3,751,978 - -0.8
3,751,978 - -1.7
3,751,989 - +0.0
3,751,989 - +0.1
3,752,054 + ABZR86_RS16605 0.12 +0.2
3,752,078 - ABZR86_RS16605 0.15 -0.4
3,752,083 + ABZR86_RS16605 0.15 +0.6
3,752,083 + ABZR86_RS16605 0.15 +0.9
3,752,084 - ABZR86_RS16605 0.16 -0.2
3,752,134 - ABZR86_RS16605 0.21 +0.0
3,752,134 - ABZR86_RS16605 0.21 -0.4
3,752,177 + ABZR86_RS16605 0.26 +1.2
3,752,242 + ABZR86_RS16605 0.33 -0.3
3,752,243 - ABZR86_RS16605 0.33 -0.4
3,752,260 + ABZR86_RS16605 0.35 +0.0
3,752,261 - ABZR86_RS16605 0.35 -0.0
3,752,261 - ABZR86_RS16605 0.35 +0.6
3,752,308 - ABZR86_RS16605 0.40 -0.7
3,752,335 - ABZR86_RS16605 0.43 -0.0
3,752,516 + ABZR86_RS16605 0.62 -0.5
3,752,516 + ABZR86_RS16605 0.62 -0.4
3,752,517 - ABZR86_RS16605 0.62 +0.5
3,752,517 - ABZR86_RS16605 0.62 +0.5
3,752,525 - ABZR86_RS16605 0.63 -0.8
3,752,606 + ABZR86_RS16605 0.72 -0.8
3,752,652 + ABZR86_RS16605 0.77 +0.2
3,752,686 - ABZR86_RS16605 0.80 -0.2
3,752,731 - ABZR86_RS16605 0.85 -0.6
3,753,006 + ABZR86_RS16610 0.25 +1.1
3,753,007 - ABZR86_RS16610 0.25 +0.4
3,753,007 - ABZR86_RS16610 0.25 +0.6
3,753,007 - ABZR86_RS16610 0.25 +1.1
3,753,111 - ABZR86_RS16610 0.45 +0.7
3,753,127 + ABZR86_RS16610 0.48 +1.1
3,753,293 - ABZR86_RS16610 0.80 -0.2
3,753,304 - ABZR86_RS16610 0.82 +1.2
3,753,378 + +0.5
3,753,378 + +0.4
3,753,379 - +0.3
3,753,427 - +1.2
3,753,438 - +1.8
3,753,530 + -0.4
3,753,707 + ABZR86_RS16615 0.25 -0.3
3,753,767 + ABZR86_RS16615 0.34 +1.8
3,753,807 + ABZR86_RS16615 0.40 -0.2

Or see this region's nucleotide sequence