Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14630

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14625 and ABZR86_RS14630 are separated by 558 nucleotidesABZR86_RS14630 and ABZR86_RS14635 are separated by 899 nucleotides ABZR86_RS14625: ABZR86_RS14625 - EF-hand domain-containing protein, at 3,270,624 to 3,270,935 _RS14625 ABZR86_RS14630: ABZR86_RS14630 - serine protease, at 3,271,494 to 3,273,470 _RS14630 ABZR86_RS14635: ABZR86_RS14635 - hypothetical protein, at 3,274,370 to 3,274,723 _RS14635 Position (kb) 3271 3272 3273 3274Strain fitness (log2 ratio) -2 -1 0 1at 3270.705 kb on + strand, within ABZR86_RS14625at 3270.716 kb on + strand, within ABZR86_RS14625at 3270.961 kb on - strandat 3270.961 kb on - strandat 3270.961 kb on - strandat 3270.964 kb on - strandat 3271.477 kb on + strandat 3271.495 kb on + strandat 3271.496 kb on - strandat 3271.591 kb on + strandat 3271.591 kb on + strandat 3271.592 kb on - strandat 3271.596 kb on - strandat 3271.712 kb on - strand, within ABZR86_RS14630at 3271.857 kb on + strand, within ABZR86_RS14630at 3271.858 kb on - strand, within ABZR86_RS14630at 3271.930 kb on + strand, within ABZR86_RS14630at 3271.930 kb on + strand, within ABZR86_RS14630at 3271.930 kb on + strand, within ABZR86_RS14630at 3272.053 kb on + strand, within ABZR86_RS14630at 3272.089 kb on + strand, within ABZR86_RS14630at 3272.152 kb on + strand, within ABZR86_RS14630at 3272.152 kb on + strand, within ABZR86_RS14630at 3272.153 kb on - strand, within ABZR86_RS14630at 3272.227 kb on + strand, within ABZR86_RS14630at 3272.422 kb on + strand, within ABZR86_RS14630at 3272.639 kb on - strand, within ABZR86_RS14630at 3272.795 kb on - strand, within ABZR86_RS14630at 3272.950 kb on + strand, within ABZR86_RS14630at 3273.001 kb on + strand, within ABZR86_RS14630at 3273.001 kb on + strand, within ABZR86_RS14630at 3273.124 kb on + strand, within ABZR86_RS14630at 3273.124 kb on + strand, within ABZR86_RS14630at 3273.250 kb on + strand, within ABZR86_RS14630at 3273.250 kb on + strand, within ABZR86_RS14630at 3273.250 kb on + strand, within ABZR86_RS14630at 3273.304 kb on + strandat 3273.340 kb on - strandat 3273.488 kb on + strandat 3273.495 kb on - strandat 3274.270 kb on + strandat 3274.320 kb on + strandat 3274.321 kb on - strandat 3274.321 kb on - strandat 3274.321 kb on - strandat 3274.321 kb on - strandat 3274.366 kb on - strandat 3274.366 kb on - strandat 3274.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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3,270,705 + ABZR86_RS14625 0.26 -0.4
3,270,716 + ABZR86_RS14625 0.29 +0.4
3,270,961 - +0.3
3,270,961 - +0.4
3,270,961 - -0.1
3,270,964 - +0.0
3,271,477 + -1.5
3,271,495 + -0.0
3,271,496 - -0.1
3,271,591 + -0.2
3,271,591 + +0.2
3,271,592 - -1.2
3,271,596 - +0.9
3,271,712 - ABZR86_RS14630 0.11 -1.5
3,271,857 + ABZR86_RS14630 0.18 -0.2
3,271,858 - ABZR86_RS14630 0.18 +0.1
3,271,930 + ABZR86_RS14630 0.22 +0.0
3,271,930 + ABZR86_RS14630 0.22 -0.4
3,271,930 + ABZR86_RS14630 0.22 -0.7
3,272,053 + ABZR86_RS14630 0.28 -1.0
3,272,089 + ABZR86_RS14630 0.30 -0.3
3,272,152 + ABZR86_RS14630 0.33 +0.4
3,272,152 + ABZR86_RS14630 0.33 +1.1
3,272,153 - ABZR86_RS14630 0.33 +0.2
3,272,227 + ABZR86_RS14630 0.37 -0.9
3,272,422 + ABZR86_RS14630 0.47 -0.0
3,272,639 - ABZR86_RS14630 0.58 +0.8
3,272,795 - ABZR86_RS14630 0.66 -0.1
3,272,950 + ABZR86_RS14630 0.74 +0.0
3,273,001 + ABZR86_RS14630 0.76 +0.3
3,273,001 + ABZR86_RS14630 0.76 +0.2
3,273,124 + ABZR86_RS14630 0.82 -0.5
3,273,124 + ABZR86_RS14630 0.82 -2.4
3,273,250 + ABZR86_RS14630 0.89 +0.7
3,273,250 + ABZR86_RS14630 0.89 -0.3
3,273,250 + ABZR86_RS14630 0.89 +1.6
3,273,304 + +0.6
3,273,340 - -0.5
3,273,488 + -0.5
3,273,495 - -0.7
3,274,270 + +0.4
3,274,320 + -0.1
3,274,321 - -1.2
3,274,321 - -0.3
3,274,321 - -0.5
3,274,321 - +0.1
3,274,366 - -0.3
3,274,366 - -0.2
3,274,376 - -0.8

Or see this region's nucleotide sequence