Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10555

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10550 and ABZR86_RS10555 are separated by 0 nucleotidesABZR86_RS10555 and ABZR86_RS10560 are separated by 194 nucleotides ABZR86_RS10550: ABZR86_RS10550 - ATP-binding protein, at 2,344,882 to 2,346,264 _RS10550 ABZR86_RS10555: ABZR86_RS10555 - hypothetical protein, at 2,346,265 to 2,346,579 _RS10555 ABZR86_RS10560: ABZR86_RS10560 - sigma-54 dependent transcriptional regulator, at 2,346,774 to 2,348,117 _RS10560 Position (kb) 2346 2347Strain fitness (log2 ratio) -1 0 1at 2345.333 kb on + strand, within ABZR86_RS10550at 2345.334 kb on - strand, within ABZR86_RS10550at 2345.772 kb on - strand, within ABZR86_RS10550at 2345.772 kb on - strand, within ABZR86_RS10550at 2345.772 kb on - strand, within ABZR86_RS10550at 2346.025 kb on + strand, within ABZR86_RS10550at 2346.025 kb on + strand, within ABZR86_RS10550at 2346.025 kb on + strand, within ABZR86_RS10550at 2346.026 kb on - strand, within ABZR86_RS10550at 2346.185 kb on + strandat 2346.185 kb on + strandat 2346.185 kb on + strandat 2346.185 kb on + strandat 2346.186 kb on - strandat 2346.186 kb on - strandat 2346.186 kb on - strandat 2346.206 kb on + strandat 2346.206 kb on + strandat 2346.206 kb on + strandat 2346.206 kb on + strandat 2346.207 kb on - strandat 2346.207 kb on - strandat 2346.459 kb on - strand, within ABZR86_RS10555at 2346.618 kb on + strandat 2346.618 kb on + strandat 2346.649 kb on - strandat 2346.649 kb on - strandat 2346.649 kb on - strandat 2346.668 kb on - strandat 2346.668 kb on - strandat 2346.668 kb on - strandat 2346.668 kb on - strandat 2346.668 kb on - strandat 2346.755 kb on + strandat 2346.755 kb on + strandat 2346.756 kb on - strandat 2346.800 kb on - strandat 2346.817 kb on + strandat 2347.105 kb on + strand, within ABZR86_RS10560at 2347.180 kb on + strand, within ABZR86_RS10560at 2347.184 kb on - strand, within ABZR86_RS10560at 2347.254 kb on + strand, within ABZR86_RS10560at 2347.254 kb on + strand, within ABZR86_RS10560at 2347.254 kb on + strand, within ABZR86_RS10560at 2347.255 kb on - strand, within ABZR86_RS10560at 2347.255 kb on - strand, within ABZR86_RS10560at 2347.427 kb on - strand, within ABZR86_RS10560

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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2,345,333 + ABZR86_RS10550 0.33 +0.2
2,345,334 - ABZR86_RS10550 0.33 -0.6
2,345,772 - ABZR86_RS10550 0.64 +0.3
2,345,772 - ABZR86_RS10550 0.64 +1.0
2,345,772 - ABZR86_RS10550 0.64 +0.3
2,346,025 + ABZR86_RS10550 0.83 +0.7
2,346,025 + ABZR86_RS10550 0.83 +0.2
2,346,025 + ABZR86_RS10550 0.83 +0.3
2,346,026 - ABZR86_RS10550 0.83 +1.2
2,346,185 + -0.5
2,346,185 + +0.1
2,346,185 + +0.0
2,346,185 + -0.4
2,346,186 - -0.2
2,346,186 - +0.7
2,346,186 - +0.1
2,346,206 + -0.0
2,346,206 + -0.1
2,346,206 + -0.4
2,346,206 + -0.6
2,346,207 - -0.8
2,346,207 - -0.0
2,346,459 - ABZR86_RS10555 0.62 +0.0
2,346,618 + +0.4
2,346,618 + +0.5
2,346,649 - -0.6
2,346,649 - +1.0
2,346,649 - -0.0
2,346,668 - +0.2
2,346,668 - -0.4
2,346,668 - -0.8
2,346,668 - -0.2
2,346,668 - -0.0
2,346,755 + +0.3
2,346,755 + -0.3
2,346,756 - +0.4
2,346,800 - +0.2
2,346,817 + +0.1
2,347,105 + ABZR86_RS10560 0.25 -0.8
2,347,180 + ABZR86_RS10560 0.30 +0.4
2,347,184 - ABZR86_RS10560 0.31 +0.4
2,347,254 + ABZR86_RS10560 0.36 +0.0
2,347,254 + ABZR86_RS10560 0.36 -1.0
2,347,254 + ABZR86_RS10560 0.36 -0.8
2,347,255 - ABZR86_RS10560 0.36 +0.1
2,347,255 - ABZR86_RS10560 0.36 -1.2
2,347,427 - ABZR86_RS10560 0.49 -0.2

Or see this region's nucleotide sequence