Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04210 and ABZR86_RS04215 overlap by 4 nucleotides ABZR86_RS04215 and ABZR86_RS04220 are separated by 5 nucleotides
ABZR86_RS04210: ABZR86_RS04210 - non-ribosomal peptide synthetase, at 938,891 to 944,008
_RS04210
ABZR86_RS04215: ABZR86_RS04215 - non-ribosomal peptide synthetase, at 944,005 to 947,175
_RS04215
ABZR86_RS04220: ABZR86_RS04220 - amino acid adenylation domain-containing protein, at 947,181 to 950,255
_RS04220
Position (kb) 944
945
946
947
948 Strain fitness (log2 ratio) -1
0
1 at 943.111 kb on + strand, within ABZR86_RS04210 at 943.112 kb on - strand, within ABZR86_RS04210 at 943.428 kb on + strand, within ABZR86_RS04210 at 943.428 kb on + strand, within ABZR86_RS04210 at 943.993 kb on - strand at 944.233 kb on + strand at 944.233 kb on + strand at 944.234 kb on - strand at 944.234 kb on - strand at 944.396 kb on + strand, within ABZR86_RS04215 at 944.396 kb on + strand, within ABZR86_RS04215 at 944.397 kb on - strand, within ABZR86_RS04215 at 944.397 kb on - strand, within ABZR86_RS04215 at 944.397 kb on - strand, within ABZR86_RS04215 at 944.471 kb on + strand, within ABZR86_RS04215 at 944.471 kb on + strand, within ABZR86_RS04215 at 944.472 kb on - strand, within ABZR86_RS04215 at 944.472 kb on - strand, within ABZR86_RS04215 at 944.472 kb on - strand, within ABZR86_RS04215 at 944.472 kb on - strand, within ABZR86_RS04215 at 944.769 kb on - strand, within ABZR86_RS04215 at 944.769 kb on - strand, within ABZR86_RS04215 at 944.822 kb on + strand, within ABZR86_RS04215 at 944.822 kb on + strand, within ABZR86_RS04215 at 944.823 kb on - strand, within ABZR86_RS04215 at 944.823 kb on - strand, within ABZR86_RS04215 at 944.823 kb on - strand, within ABZR86_RS04215 at 944.823 kb on - strand, within ABZR86_RS04215 at 944.931 kb on - strand, within ABZR86_RS04215 at 945.085 kb on + strand, within ABZR86_RS04215 at 945.085 kb on + strand, within ABZR86_RS04215 at 945.086 kb on - strand, within ABZR86_RS04215 at 945.086 kb on - strand, within ABZR86_RS04215 at 945.327 kb on + strand, within ABZR86_RS04215 at 945.341 kb on + strand, within ABZR86_RS04215 at 945.341 kb on + strand, within ABZR86_RS04215 at 945.560 kb on + strand, within ABZR86_RS04215 at 945.621 kb on + strand, within ABZR86_RS04215 at 945.621 kb on + strand, within ABZR86_RS04215 at 945.622 kb on - strand, within ABZR86_RS04215 at 945.622 kb on - strand, within ABZR86_RS04215 at 945.631 kb on + strand, within ABZR86_RS04215 at 945.631 kb on + strand, within ABZR86_RS04215 at 945.631 kb on + strand, within ABZR86_RS04215 at 945.668 kb on + strand, within ABZR86_RS04215 at 945.668 kb on + strand, within ABZR86_RS04215 at 945.971 kb on + strand, within ABZR86_RS04215 at 945.971 kb on + strand, within ABZR86_RS04215 at 945.972 kb on - strand, within ABZR86_RS04215 at 945.972 kb on - strand, within ABZR86_RS04215 at 946.148 kb on - strand, within ABZR86_RS04215 at 946.224 kb on - strand, within ABZR86_RS04215 at 946.224 kb on - strand, within ABZR86_RS04215 at 946.287 kb on + strand, within ABZR86_RS04215 at 946.300 kb on + strand, within ABZR86_RS04215 at 946.686 kb on - strand, within ABZR86_RS04215 at 946.795 kb on - strand, within ABZR86_RS04215 at 947.112 kb on + strand at 947.112 kb on + strand at 947.113 kb on - strand at 947.153 kb on - strand at 947.153 kb on - strand at 947.153 kb on - strand at 947.153 kb on - strand at 947.273 kb on + strand at 947.627 kb on - strand, within ABZR86_RS04220 at 947.988 kb on - strand, within ABZR86_RS04220 at 947.988 kb on - strand, within ABZR86_RS04220 at 947.988 kb on - strand, within ABZR86_RS04220 at 947.988 kb on - strand, within ABZR86_RS04220 at 948.053 kb on + strand, within ABZR86_RS04220 at 948.054 kb on - strand, within ABZR86_RS04220 at 948.054 kb on - strand, within ABZR86_RS04220 at 948.054 kb on - strand, within ABZR86_RS04220 at 948.076 kb on + strand, within ABZR86_RS04220
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 943,111 + ABZR86_RS04210 0.82 -0.1 943,112 - ABZR86_RS04210 0.82 +0.8 943,428 + ABZR86_RS04210 0.89 -0.1 943,428 + ABZR86_RS04210 0.89 +0.2 943,993 - -1.4 944,233 + -0.2 944,233 + -0.2 944,234 - -1.7 944,234 - +0.3 944,396 + ABZR86_RS04215 0.12 +0.7 944,396 + ABZR86_RS04215 0.12 -0.2 944,397 - ABZR86_RS04215 0.12 +0.4 944,397 - ABZR86_RS04215 0.12 +0.0 944,397 - ABZR86_RS04215 0.12 -0.1 944,471 + ABZR86_RS04215 0.15 -0.2 944,471 + ABZR86_RS04215 0.15 -0.6 944,472 - ABZR86_RS04215 0.15 -0.5 944,472 - ABZR86_RS04215 0.15 +0.1 944,472 - ABZR86_RS04215 0.15 +0.2 944,472 - ABZR86_RS04215 0.15 +0.2 944,769 - ABZR86_RS04215 0.24 +0.5 944,769 - ABZR86_RS04215 0.24 -0.0 944,822 + ABZR86_RS04215 0.26 +0.1 944,822 + ABZR86_RS04215 0.26 +0.7 944,823 - ABZR86_RS04215 0.26 +0.8 944,823 - ABZR86_RS04215 0.26 -0.5 944,823 - ABZR86_RS04215 0.26 -0.3 944,823 - ABZR86_RS04215 0.26 +0.1 944,931 - ABZR86_RS04215 0.29 +0.1 945,085 + ABZR86_RS04215 0.34 -0.5 945,085 + ABZR86_RS04215 0.34 +0.7 945,086 - ABZR86_RS04215 0.34 +0.7 945,086 - ABZR86_RS04215 0.34 +0.1 945,327 + ABZR86_RS04215 0.42 -0.0 945,341 + ABZR86_RS04215 0.42 +0.3 945,341 + ABZR86_RS04215 0.42 +0.3 945,560 + ABZR86_RS04215 0.49 -0.5 945,621 + ABZR86_RS04215 0.51 +1.1 945,621 + ABZR86_RS04215 0.51 +0.2 945,622 - ABZR86_RS04215 0.51 +0.4 945,622 - ABZR86_RS04215 0.51 -0.4 945,631 + ABZR86_RS04215 0.51 -0.1 945,631 + ABZR86_RS04215 0.51 -0.3 945,631 + ABZR86_RS04215 0.51 +0.5 945,668 + ABZR86_RS04215 0.52 +0.3 945,668 + ABZR86_RS04215 0.52 +0.1 945,971 + ABZR86_RS04215 0.62 -0.0 945,971 + ABZR86_RS04215 0.62 -1.0 945,972 - ABZR86_RS04215 0.62 -0.1 945,972 - ABZR86_RS04215 0.62 +1.1 946,148 - ABZR86_RS04215 0.68 +1.1 946,224 - ABZR86_RS04215 0.70 +0.2 946,224 - ABZR86_RS04215 0.70 +0.1 946,287 + ABZR86_RS04215 0.72 -0.2 946,300 + ABZR86_RS04215 0.72 -1.5 946,686 - ABZR86_RS04215 0.85 +0.1 946,795 - ABZR86_RS04215 0.88 -0.2 947,112 + +0.3 947,112 + +0.7 947,113 - +0.3 947,153 - -0.9 947,153 - +0.4 947,153 - -0.6 947,153 - +0.1 947,273 + -0.0 947,627 - ABZR86_RS04220 0.15 -0.0 947,988 - ABZR86_RS04220 0.26 +0.3 947,988 - ABZR86_RS04220 0.26 -0.1 947,988 - ABZR86_RS04220 0.26 -0.4 947,988 - ABZR86_RS04220 0.26 +0.1 948,053 + ABZR86_RS04220 0.28 +0.0 948,054 - ABZR86_RS04220 0.28 +0.9 948,054 - ABZR86_RS04220 0.28 -0.8 948,054 - ABZR86_RS04220 0.28 +0.2 948,076 + ABZR86_RS04220 0.29 -0.3
Or see this region's nucleotide sequence