Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04210

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04200 and ABZR86_RS04205 overlap by 4 nucleotidesABZR86_RS04205 and ABZR86_RS04210 are separated by 111 nucleotidesABZR86_RS04210 and ABZR86_RS04215 overlap by 4 nucleotides ABZR86_RS04200: ABZR86_RS04200 - arginine deiminase family protein, at 936,567 to 937,895 _RS04200 ABZR86_RS04205: ABZR86_RS04205 - CoA ester lyase, at 937,892 to 938,779 _RS04205 ABZR86_RS04210: ABZR86_RS04210 - non-ribosomal peptide synthetase, at 938,891 to 944,008 _RS04210 ABZR86_RS04215: ABZR86_RS04215 - non-ribosomal peptide synthetase, at 944,005 to 947,175 _RS04215 Position (kb) 938 939 940 941 942 943 944 945Strain fitness (log2 ratio) -2 -1 0 1at 938.024 kb on + strand, within ABZR86_RS04205at 938.025 kb on - strand, within ABZR86_RS04205at 938.025 kb on - strand, within ABZR86_RS04205at 938.278 kb on - strand, within ABZR86_RS04205at 938.381 kb on + strand, within ABZR86_RS04205at 938.508 kb on + strand, within ABZR86_RS04205at 938.509 kb on - strand, within ABZR86_RS04205at 938.644 kb on + strand, within ABZR86_RS04205at 938.957 kb on - strandat 938.977 kb on + strandat 939.054 kb on + strandat 939.054 kb on + strandat 939.054 kb on + strandat 939.054 kb on + strandat 939.055 kb on - strandat 939.070 kb on + strandat 939.070 kb on + strandat 939.070 kb on + strandat 939.070 kb on + strandat 939.071 kb on - strandat 939.071 kb on - strandat 939.352 kb on - strandat 939.405 kb on + strand, within ABZR86_RS04210at 939.405 kb on + strand, within ABZR86_RS04210at 939.406 kb on - strand, within ABZR86_RS04210at 939.406 kb on - strand, within ABZR86_RS04210at 939.576 kb on + strand, within ABZR86_RS04210at 939.577 kb on - strand, within ABZR86_RS04210at 939.577 kb on - strand, within ABZR86_RS04210at 939.596 kb on + strand, within ABZR86_RS04210at 939.596 kb on + strand, within ABZR86_RS04210at 939.601 kb on + strand, within ABZR86_RS04210at 939.612 kb on + strand, within ABZR86_RS04210at 939.637 kb on + strand, within ABZR86_RS04210at 939.638 kb on - strand, within ABZR86_RS04210at 939.710 kb on + strand, within ABZR86_RS04210at 939.710 kb on + strand, within ABZR86_RS04210at 939.765 kb on + strand, within ABZR86_RS04210at 939.766 kb on - strand, within ABZR86_RS04210at 939.766 kb on - strand, within ABZR86_RS04210at 940.196 kb on + strand, within ABZR86_RS04210at 940.197 kb on - strand, within ABZR86_RS04210at 940.204 kb on + strand, within ABZR86_RS04210at 940.206 kb on + strand, within ABZR86_RS04210at 940.206 kb on + strand, within ABZR86_RS04210at 940.278 kb on + strand, within ABZR86_RS04210at 940.278 kb on + strand, within ABZR86_RS04210at 940.414 kb on + strand, within ABZR86_RS04210at 940.629 kb on + strand, within ABZR86_RS04210at 940.735 kb on + strand, within ABZR86_RS04210at 940.765 kb on - strand, within ABZR86_RS04210at 941.152 kb on + strand, within ABZR86_RS04210at 941.152 kb on + strand, within ABZR86_RS04210at 941.153 kb on - strand, within ABZR86_RS04210at 941.153 kb on - strand, within ABZR86_RS04210at 941.153 kb on - strand, within ABZR86_RS04210at 941.153 kb on - strand, within ABZR86_RS04210at 941.220 kb on + strand, within ABZR86_RS04210at 941.220 kb on + strand, within ABZR86_RS04210at 941.220 kb on + strand, within ABZR86_RS04210at 941.221 kb on - strand, within ABZR86_RS04210at 941.221 kb on - strand, within ABZR86_RS04210at 941.296 kb on - strand, within ABZR86_RS04210at 941.343 kb on - strand, within ABZR86_RS04210at 941.354 kb on + strand, within ABZR86_RS04210at 941.517 kb on + strand, within ABZR86_RS04210at 941.566 kb on - strand, within ABZR86_RS04210at 941.596 kb on - strand, within ABZR86_RS04210at 941.596 kb on - strand, within ABZR86_RS04210at 941.649 kb on + strand, within ABZR86_RS04210at 941.650 kb on - strand, within ABZR86_RS04210at 941.650 kb on - strand, within ABZR86_RS04210at 941.650 kb on - strand, within ABZR86_RS04210at 941.659 kb on + strand, within ABZR86_RS04210at 941.659 kb on + strand, within ABZR86_RS04210at 941.659 kb on + strand, within ABZR86_RS04210at 941.660 kb on - strand, within ABZR86_RS04210at 941.660 kb on - strand, within ABZR86_RS04210at 941.757 kb on + strand, within ABZR86_RS04210at 941.757 kb on + strand, within ABZR86_RS04210at 942.021 kb on + strand, within ABZR86_RS04210at 942.021 kb on + strand, within ABZR86_RS04210at 942.163 kb on + strand, within ABZR86_RS04210at 942.163 kb on + strand, within ABZR86_RS04210at 942.165 kb on + strand, within ABZR86_RS04210at 942.165 kb on + strand, within ABZR86_RS04210at 942.165 kb on + strand, within ABZR86_RS04210at 942.165 kb on + strand, within ABZR86_RS04210at 942.166 kb on - strand, within ABZR86_RS04210at 942.166 kb on - strand, within ABZR86_RS04210at 942.166 kb on - strand, within ABZR86_RS04210at 942.166 kb on - strand, within ABZR86_RS04210at 942.166 kb on - strand, within ABZR86_RS04210at 942.166 kb on - strand, within ABZR86_RS04210at 942.166 kb on - strand, within ABZR86_RS04210at 942.174 kb on + strand, within ABZR86_RS04210at 942.175 kb on - strand, within ABZR86_RS04210at 942.363 kb on + strand, within ABZR86_RS04210at 942.474 kb on - strand, within ABZR86_RS04210at 942.509 kb on - strand, within ABZR86_RS04210at 942.780 kb on + strand, within ABZR86_RS04210at 942.780 kb on + strand, within ABZR86_RS04210at 942.946 kb on + strand, within ABZR86_RS04210at 942.947 kb on - strand, within ABZR86_RS04210at 942.992 kb on - strand, within ABZR86_RS04210at 943.111 kb on + strand, within ABZR86_RS04210at 943.112 kb on - strand, within ABZR86_RS04210at 943.428 kb on + strand, within ABZR86_RS04210at 943.428 kb on + strand, within ABZR86_RS04210at 943.993 kb on - strandat 944.233 kb on + strandat 944.233 kb on + strandat 944.234 kb on - strandat 944.234 kb on - strandat 944.396 kb on + strand, within ABZR86_RS04215at 944.396 kb on + strand, within ABZR86_RS04215at 944.397 kb on - strand, within ABZR86_RS04215at 944.397 kb on - strand, within ABZR86_RS04215at 944.397 kb on - strand, within ABZR86_RS04215at 944.471 kb on + strand, within ABZR86_RS04215at 944.471 kb on + strand, within ABZR86_RS04215at 944.472 kb on - strand, within ABZR86_RS04215at 944.472 kb on - strand, within ABZR86_RS04215at 944.472 kb on - strand, within ABZR86_RS04215at 944.472 kb on - strand, within ABZR86_RS04215at 944.769 kb on - strand, within ABZR86_RS04215at 944.769 kb on - strand, within ABZR86_RS04215at 944.822 kb on + strand, within ABZR86_RS04215at 944.822 kb on + strand, within ABZR86_RS04215at 944.823 kb on - strand, within ABZR86_RS04215at 944.823 kb on - strand, within ABZR86_RS04215at 944.823 kb on - strand, within ABZR86_RS04215at 944.823 kb on - strand, within ABZR86_RS04215at 944.931 kb on - strand, within ABZR86_RS04215

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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938,024 + ABZR86_RS04205 0.15 -0.6
938,025 - ABZR86_RS04205 0.15 +1.0
938,025 - ABZR86_RS04205 0.15 +0.0
938,278 - ABZR86_RS04205 0.43 -0.5
938,381 + ABZR86_RS04205 0.55 +0.6
938,508 + ABZR86_RS04205 0.69 +0.1
938,509 - ABZR86_RS04205 0.69 +0.8
938,644 + ABZR86_RS04205 0.85 +0.2
938,957 - -0.0
938,977 + +0.5
939,054 + -0.6
939,054 + -1.6
939,054 + +0.8
939,054 + +0.9
939,055 - +0.3
939,070 + +0.6
939,070 + -0.2
939,070 + +0.1
939,070 + +0.7
939,071 - -2.2
939,071 - +0.4
939,352 - -1.4
939,405 + ABZR86_RS04210 0.10 -0.2
939,405 + ABZR86_RS04210 0.10 +0.3
939,406 - ABZR86_RS04210 0.10 +0.1
939,406 - ABZR86_RS04210 0.10 -0.6
939,576 + ABZR86_RS04210 0.13 +0.3
939,577 - ABZR86_RS04210 0.13 +0.7
939,577 - ABZR86_RS04210 0.13 +0.7
939,596 + ABZR86_RS04210 0.14 -0.5
939,596 + ABZR86_RS04210 0.14 -0.9
939,601 + ABZR86_RS04210 0.14 -0.7
939,612 + ABZR86_RS04210 0.14 +0.1
939,637 + ABZR86_RS04210 0.15 +0.1
939,638 - ABZR86_RS04210 0.15 -0.1
939,710 + ABZR86_RS04210 0.16 -0.1
939,710 + ABZR86_RS04210 0.16 +0.2
939,765 + ABZR86_RS04210 0.17 +0.5
939,766 - ABZR86_RS04210 0.17 +1.4
939,766 - ABZR86_RS04210 0.17 -0.6
940,196 + ABZR86_RS04210 0.25 +0.0
940,197 - ABZR86_RS04210 0.26 +0.1
940,204 + ABZR86_RS04210 0.26 -0.2
940,206 + ABZR86_RS04210 0.26 -0.0
940,206 + ABZR86_RS04210 0.26 +0.6
940,278 + ABZR86_RS04210 0.27 +0.4
940,278 + ABZR86_RS04210 0.27 +0.9
940,414 + ABZR86_RS04210 0.30 +0.5
940,629 + ABZR86_RS04210 0.34 -0.0
940,735 + ABZR86_RS04210 0.36 -0.1
940,765 - ABZR86_RS04210 0.37 -0.3
941,152 + ABZR86_RS04210 0.44 +0.4
941,152 + ABZR86_RS04210 0.44 +0.3
941,153 - ABZR86_RS04210 0.44 -0.4
941,153 - ABZR86_RS04210 0.44 +0.2
941,153 - ABZR86_RS04210 0.44 -0.2
941,153 - ABZR86_RS04210 0.44 +1.2
941,220 + ABZR86_RS04210 0.46 -0.3
941,220 + ABZR86_RS04210 0.46 +0.6
941,220 + ABZR86_RS04210 0.46 -1.4
941,221 - ABZR86_RS04210 0.46 -0.8
941,221 - ABZR86_RS04210 0.46 -0.5
941,296 - ABZR86_RS04210 0.47 +0.1
941,343 - ABZR86_RS04210 0.48 -0.3
941,354 + ABZR86_RS04210 0.48 +0.4
941,517 + ABZR86_RS04210 0.51 -0.0
941,566 - ABZR86_RS04210 0.52 -0.1
941,596 - ABZR86_RS04210 0.53 -0.9
941,596 - ABZR86_RS04210 0.53 -0.7
941,649 + ABZR86_RS04210 0.54 -0.0
941,650 - ABZR86_RS04210 0.54 -1.1
941,650 - ABZR86_RS04210 0.54 -0.9
941,650 - ABZR86_RS04210 0.54 +0.1
941,659 + ABZR86_RS04210 0.54 -0.5
941,659 + ABZR86_RS04210 0.54 +0.1
941,659 + ABZR86_RS04210 0.54 -0.4
941,660 - ABZR86_RS04210 0.54 +0.8
941,660 - ABZR86_RS04210 0.54 +0.3
941,757 + ABZR86_RS04210 0.56 +0.0
941,757 + ABZR86_RS04210 0.56 -0.9
942,021 + ABZR86_RS04210 0.61 +0.2
942,021 + ABZR86_RS04210 0.61 +0.8
942,163 + ABZR86_RS04210 0.64 -0.8
942,163 + ABZR86_RS04210 0.64 +0.1
942,165 + ABZR86_RS04210 0.64 -0.1
942,165 + ABZR86_RS04210 0.64 -0.7
942,165 + ABZR86_RS04210 0.64 -0.3
942,165 + ABZR86_RS04210 0.64 +0.1
942,166 - ABZR86_RS04210 0.64 -0.0
942,166 - ABZR86_RS04210 0.64 -0.5
942,166 - ABZR86_RS04210 0.64 +0.7
942,166 - ABZR86_RS04210 0.64 -1.8
942,166 - ABZR86_RS04210 0.64 +0.1
942,166 - ABZR86_RS04210 0.64 -0.0
942,166 - ABZR86_RS04210 0.64 +0.1
942,174 + ABZR86_RS04210 0.64 +0.0
942,175 - ABZR86_RS04210 0.64 +0.4
942,363 + ABZR86_RS04210 0.68 +0.8
942,474 - ABZR86_RS04210 0.70 +1.0
942,509 - ABZR86_RS04210 0.71 +0.3
942,780 + ABZR86_RS04210 0.76 +0.3
942,780 + ABZR86_RS04210 0.76 +0.4
942,946 + ABZR86_RS04210 0.79 +0.1
942,947 - ABZR86_RS04210 0.79 +0.4
942,992 - ABZR86_RS04210 0.80 -0.1
943,111 + ABZR86_RS04210 0.82 -0.1
943,112 - ABZR86_RS04210 0.82 +0.8
943,428 + ABZR86_RS04210 0.89 -0.1
943,428 + ABZR86_RS04210 0.89 +0.2
943,993 - -1.4
944,233 + -0.2
944,233 + -0.2
944,234 - -1.7
944,234 - +0.3
944,396 + ABZR86_RS04215 0.12 +0.7
944,396 + ABZR86_RS04215 0.12 -0.2
944,397 - ABZR86_RS04215 0.12 +0.4
944,397 - ABZR86_RS04215 0.12 +0.0
944,397 - ABZR86_RS04215 0.12 -0.1
944,471 + ABZR86_RS04215 0.15 -0.2
944,471 + ABZR86_RS04215 0.15 -0.6
944,472 - ABZR86_RS04215 0.15 -0.5
944,472 - ABZR86_RS04215 0.15 +0.1
944,472 - ABZR86_RS04215 0.15 +0.2
944,472 - ABZR86_RS04215 0.15 +0.2
944,769 - ABZR86_RS04215 0.24 +0.5
944,769 - ABZR86_RS04215 0.24 -0.0
944,822 + ABZR86_RS04215 0.26 +0.1
944,822 + ABZR86_RS04215 0.26 +0.7
944,823 - ABZR86_RS04215 0.26 +0.8
944,823 - ABZR86_RS04215 0.26 -0.5
944,823 - ABZR86_RS04215 0.26 -0.3
944,823 - ABZR86_RS04215 0.26 +0.1
944,931 - ABZR86_RS04215 0.29 +0.1

Or see this region's nucleotide sequence