Strain Fitness in Sinorhizobium meliloti 1021 around SMc04152

Experiment: nitrate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04153 and SMc04152 are separated by 10 nucleotidesSMc04152 and SMc04151 overlap by 4 nucleotides SMc04153: SMc04153 - aminomethyltransferase, at 113,903 to 114,958 SMc04153 SMc04152: SMc04152 - hypothetical protein, at 114,969 to 115,574 SMc04152 SMc04151: SMc04151 - ferredoxin protein, at 115,571 to 116,536 SMc04151 Position (kb) 114 115 116Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 114.038 kb on + strand, within SMc04153at 114.038 kb on + strand, within SMc04153at 114.039 kb on - strand, within SMc04153at 114.039 kb on - strand, within SMc04153at 114.063 kb on - strand, within SMc04153at 114.086 kb on + strand, within SMc04153at 114.086 kb on + strand, within SMc04153at 114.087 kb on - strand, within SMc04153at 114.287 kb on + strand, within SMc04153at 114.300 kb on - strand, within SMc04153at 114.387 kb on - strand, within SMc04153at 114.388 kb on + strand, within SMc04153at 114.528 kb on - strand, within SMc04153at 114.539 kb on + strand, within SMc04153at 114.545 kb on + strand, within SMc04153at 114.545 kb on + strand, within SMc04153at 114.545 kb on + strand, within SMc04153at 114.563 kb on + strand, within SMc04153at 114.563 kb on + strand, within SMc04153at 114.564 kb on - strand, within SMc04153at 114.564 kb on - strand, within SMc04153at 114.564 kb on - strand, within SMc04153at 114.792 kb on - strand, within SMc04153at 114.957 kb on - strandat 114.986 kb on + strandat 114.987 kb on - strandat 115.003 kb on - strandat 115.131 kb on + strand, within SMc04152at 115.131 kb on + strand, within SMc04152at 115.132 kb on - strand, within SMc04152at 115.132 kb on - strand, within SMc04152at 115.262 kb on + strand, within SMc04152at 115.278 kb on + strand, within SMc04152at 115.278 kb on + strand, within SMc04152at 115.279 kb on - strand, within SMc04152at 115.280 kb on + strand, within SMc04152at 115.474 kb on + strand, within SMc04152at 115.677 kb on - strand, within SMc04151at 115.763 kb on + strand, within SMc04151at 115.763 kb on + strand, within SMc04151at 115.764 kb on - strand, within SMc04151at 116.003 kb on + strand, within SMc04151at 116.003 kb on + strand, within SMc04151at 116.004 kb on - strand, within SMc04151at 116.004 kb on - strand, within SMc04151at 116.033 kb on + strand, within SMc04151at 116.034 kb on - strand, within SMc04151at 116.081 kb on + strand, within SMc04151at 116.082 kb on - strand, within SMc04151at 116.153 kb on + strand, within SMc04151at 116.153 kb on + strand, within SMc04151at 116.153 kb on + strand, within SMc04151at 116.153 kb on + strand, within SMc04151at 116.154 kb on - strand, within SMc04151at 116.154 kb on - strand, within SMc04151at 116.154 kb on - strand, within SMc04151at 116.188 kb on - strand, within SMc04151at 116.188 kb on - strand, within SMc04151

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 40 mM
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114,038 + SMc04153 0.13 +0.8
114,038 + SMc04153 0.13 +0.9
114,039 - SMc04153 0.13 -0.3
114,039 - SMc04153 0.13 +0.2
114,063 - SMc04153 0.15 -2.8
114,086 + SMc04153 0.17 -0.3
114,086 + SMc04153 0.17 +0.3
114,087 - SMc04153 0.17 +0.1
114,287 + SMc04153 0.36 -0.0
114,300 - SMc04153 0.38 -0.0
114,387 - SMc04153 0.46 -1.5
114,388 + SMc04153 0.46 -0.7
114,528 - SMc04153 0.59 -0.9
114,539 + SMc04153 0.60 +0.6
114,545 + SMc04153 0.61 +2.5
114,545 + SMc04153 0.61 +0.0
114,545 + SMc04153 0.61 -0.1
114,563 + SMc04153 0.62 +0.3
114,563 + SMc04153 0.62 -0.4
114,564 - SMc04153 0.63 +0.5
114,564 - SMc04153 0.63 +1.0
114,564 - SMc04153 0.63 -0.8
114,792 - SMc04153 0.84 +0.2
114,957 - +0.5
114,986 + -0.5
114,987 - -0.1
115,003 - +1.6
115,131 + SMc04152 0.27 +0.6
115,131 + SMc04152 0.27 +0.5
115,132 - SMc04152 0.27 -1.6
115,132 - SMc04152 0.27 -0.1
115,262 + SMc04152 0.48 -1.2
115,278 + SMc04152 0.51 +0.7
115,278 + SMc04152 0.51 -0.7
115,279 - SMc04152 0.51 -1.2
115,280 + SMc04152 0.51 -3.0
115,474 + SMc04152 0.83 +0.0
115,677 - SMc04151 0.11 -4.5
115,763 + SMc04151 0.20 -0.5
115,763 + SMc04151 0.20 +0.5
115,764 - SMc04151 0.20 +2.7
116,003 + SMc04151 0.45 +1.8
116,003 + SMc04151 0.45 -0.0
116,004 - SMc04151 0.45 -0.5
116,004 - SMc04151 0.45 -1.7
116,033 + SMc04151 0.48 +1.1
116,034 - SMc04151 0.48 +1.1
116,081 + SMc04151 0.53 -0.5
116,082 - SMc04151 0.53 -0.1
116,153 + SMc04151 0.60 -0.4
116,153 + SMc04151 0.60 -1.3
116,153 + SMc04151 0.60 -0.5
116,153 + SMc04151 0.60 -0.5
116,154 - SMc04151 0.60 +0.0
116,154 - SMc04151 0.60 +1.0
116,154 - SMc04151 0.60 +1.2
116,188 - SMc04151 0.64 -1.9
116,188 - SMc04151 0.64 -0.0

Or see this region's nucleotide sequence